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Information on SUBCLASS 3.5.3
Subclass Accession number: 1164
Subclass: 3.5.3 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 9.5 +/- 11.2
Average RMSD (Å) : 0.556 +/- 0.270

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXpXphX
(φψ)-conformation: bbpbpaa
Pattern: xx[hilv]x[aegqt][DKNSTY][afil][adgks][dehn][afivy]x[adenrs]
Conservation:-0.418-2.0360.888-0.416-0.4400.4460.322-0.4081.9130.865-0.8000.085
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dhs_*_3371dhs   -337348VKVYADASLVFPEEE-S-HHHHHHbbbxbxaaaaaa
1dy5_A_431dy5   A4556TFVHESLADVQAEEE-S-HHHHHHbbbbbpaaaaaa
1gqv_A_401gqv   A4253TFLLTTFANVVNEEESS-HHHHHHbbxxbxaaaaaa
1jj2_Q_131jj2   Q1930RERQMSFKHSKAEEE-S-HHHHHHblxxbxaaaaaa
1jqe_A_1111jqe   A114125AWHKETSSEYQSEEE-S-HHHHHHbbbxbxaaaaaa
1m2k_A_2231m2k   A223234YSLRGKAGEVMDEEE-S-HHHHHHbbxxbxaaaaaa
1o97_D_3011o97   D301312YGIVADIFDIEEEEE-S-HHHHHHbbbxbxaaaaaa
1q14_A_2641q14   A264275LIVHQYSDEFAEEEE-S-HHHHHHbbbxbxaaaaaa
1v7c_A_1261v7c   A128139VQVEGNFDDALREEESS-HHHHHHbbbxbxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dhs_*_3371dhs   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 341
1dhs_*_3371dhs   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 342
1dhs_*_3371dhs   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 343
1dhs_*_3371dhs   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 344
1dy5_A_431dy5   A     ACTACETATE ION V - 43
1dy5_A_431dy5   A     ACTACETATE ION N - 44
1dy5_A_431dy5   A     ACTACETATE ION T - 45
1dy5_A_431dy5   A     ACTACETATE ION F - 46
1dy5_A_431dy5   A     IPAISOPROPYL ALCOHOL H - 48
1dy5_A_431dy5   A     IPAISOPROPYL ALCOHOL E - 49
1dy5_A_431dy5   A     IPAISOPROPYL ALCOHOL S - 50
1dy5_A_431dy5   A     IPAISOPROPYL ALCOHOL Q - 55
1dy5_A_431dy5   A     IPAISOPROPYL ALCOHOL A - 56
1gqv_A_401gqv   A     ACTACETATE ION L - 44
1gqv_A_401gqv   A     ACTACETATE ION T - 46
1gqv_A_401gqv   A     ACTACETATE ION T - 47
1gqv_A_401gqv   A     ACTACETATE ION N - 50
1gqv_A_401gqv   A     ACTACETATE ION V - 51
1gqv_A_401gqv   A     ACTACETATE ION V - 54
1jqe_A_1111jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 118
1jqe_A_1111jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE T - 119
1jqe_A_1111jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 120
1jqe_A_1111jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 121
1m2k_A_2231m2k   A     APRADENOSINE-5-DIPHOSPHORIBOSE G - 227
1m2k_A_2231m2k   A     APRADENOSINE-5-DIPHOSPHORIBOSE K - 228
1m2k_A_2231m2k   A     APRADENOSINE-5-DIPHOSPHORIBOSE A - 229
1m2k_A_2231m2k   A     APRADENOSINE-5-DIPHOSPHORIBOSE G - 230
1o97_D_3011o97   D     FADFLAVIN-ADENINE DINUCLEOTIDE A - 305
1o97_D_3011o97   D     FADFLAVIN-ADENINE DINUCLEOTIDE D - 306
1o97_D_3011o97   D     FADFLAVIN-ADENINE DINUCLEOTIDE I - 307
1o97_D_3011o97   D     FADFLAVIN-ADENINE DINUCLEOTIDE F - 308
1v7c_A_1261v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID F - 134
1v7c_A_1261v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID L - 138
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gqv_A_401gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AQ - 40
1gqv_A_401gqv   A AC1ACT BINDING SITE FOR CHAIN AT - 46
1gqv_A_401gqv   A AC1ACT BINDING SITE FOR CHAIN AN - 50

Clusters included in this Subclass
CLUSTER: EH.3.236
CLUSTER: EH.4.52