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Information on SUBCLASS 3.7.2
Subclass Accession number: 1179
Subclass: 3.7.2 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 8.8 +/- 12.5
Average RMSD (Å) : 1.073 +/- 0.168

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: hhXXpXp
(φψ)-conformation: bbpabaa
Pattern: [cfgimt][flpvw][agltv][aegrs][adnqrst][adegpqst][ehkny]x[acfmpvy]xxx
Conservation:0.2560.405-0.013-0.5720.898-0.0972.585-1.149-0.439-0.220-0.916-0.738
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1atg_*_521atg   -5364FFSADEKSPEKLEE-SSSHHHHHHbbxabaaaaaaa
1f74_A_1841f74   A185196IWAGFDEMMLPAEEE--GGGHHHHbbxabaaaaaaa
1f9v_A_5661f9v   A566577CKLESEEMVEIIEE-SSGGGHHHHbxbabaaaaaaa
1g8m_A_1441g8m   A144155TVVCDPADYSSVEEE--GGGHHHHxbbabaaaaaaa
1gpu_A_621gpu   A6374FVLSNGHAVALLEEESSGGGHHHHbbxaxaaaaaaa
1itz_A_711itz   A7283FVLSAGHGCMLQEEESSGGGHHHHbbxaxaaaaaaa
1lj8_A_591lj8   A6273GVGLRSEDRKAREEB-STTHHHHHxbbabaaaaaaa
1o94_A_5301o94   A533544ILNADTYFMAPSEEE---SSHHHHbbbabaFaaaaa
1olt_A_741olt   A7485IVTRQQHKADQYEE-S-THHHHHHbxbaxaaaaaaa
1quq_A_1401quq   A147158MPLEDMNEFTTHEE-SSTHHHHHHbpxabaaaaaaa
1set_A_2201set   A221232YLTGTAEVVLNAEE-SSTHHHHHHbxxabaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1atg_*_521atg   *     WO4TUNGSTATE(VI)ION S - 55
1atg_*_521atg   *     WO4TUNGSTATE(VI)ION A - 56
1f74_A_1841f74   A     NAY6,7,8,9-TETRAHYDROXY-5-METHYLCARBOXAMIDO-2-OXONONANOIC ACID G - 188
1f74_A_1841f74   A     NAY6,7,8,9-TETRAHYDROXY-5-METHYLCARBOXAMIDO-2-OXONONANOIC ACID F - 189
1f74_A_1841f74   A     NAY6,7,8,9-TETRAHYDROXY-5-METHYLCARBOXAMIDO-2-OXONONANOIC ACID D - 190
1f74_A_1841f74   A     NAY6,7,8,9-TETRAHYDROXY-5-METHYLCARBOXAMIDO-2-OXONONANOIC ACID E - 191
1g8m_A_1441g8m   A     MSESELENOMETHIONINE T - 144
1g8m_A_1441g8m   A     GGUANOSINE-5'-MONOPHOSPHATE T - 144
1g8m_A_1441g8m   A     MSESELENOMETHIONINE S - 154
1g8m_A_1441g8m   A     MSESELENOMETHIONINE V - 155
1g8m_A_1441g8m   A     GGUANOSINE-5'-MONOPHOSPHATE V - 155
1g8m_A_1441g8m   A     MSESELENOMETHIONINE A - 156
1g8m_A_1441g8m   A     GGUANOSINE-5'-MONOPHOSPHATE A - 156
1g8m_A_1441g8m   A     MSESELENOMETHIONINE K - 157
1g8m_A_1441g8m   A     GGUANOSINE-5'-MONOPHOSPHATE K - 157
1gpu_A_621gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE N - 67
1gpu_A_621gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE G - 68
1gpu_A_621gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE H - 69
1gpu_A_621gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE A - 70
1itz_A_711itz   A     TPPTHIAMINE DIPHOSPHATE A - 76
1itz_A_711itz   A     TPPTHIAMINE DIPHOSPHATE H - 78
1lj8_A_591lj8   A     MSESELENOMETHIONINE S - 59
1lj8_A_591lj8   A     MSESELENOMETHIONINE I - 60
1lj8_A_591lj8   A     MSESELENOMETHIONINE C - 61
1lj8_A_591lj8   A     MSESELENOMETHIONINE G - 62
1lj8_A_591lj8   A     MSESELENOMETHIONINE V - 63
1lj8_A_591lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 63
1lj8_A_591lj8   A     MSESELENOMETHIONINE G - 64
1lj8_A_591lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 65
1lj8_A_591lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 66
1lj8_A_591lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 68
1lj8_A_591lj8   A     MSESELENOMETHIONINE D - 69
1lj8_A_591lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 69
1lj8_A_591lj8   A     MSESELENOMETHIONINE R - 70
1lj8_A_591lj8   A     MSESELENOMETHIONINE A - 72
1lj8_A_591lj8   A     MSESELENOMETHIONINE R - 73
1lj8_A_591lj8   A     MSESELENOMETHIONINE L - 76
1olt_A_741olt   A     FS4IRON/SULFUR CLUSTER V - 75
1set_A_2201set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE G - 224
1set_A_2201set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE T - 225
1set_A_2201set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE A - 226
1set_A_2201set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE E - 227
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gpu_A_621gpu   A AC2THD BINDING SITE FOR CHAIN AH - 69

Clusters included in this Subclass
CLUSTER: EH.5.18
CLUSTER: EH.6.21