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Information on SUBCLASS 5.4.1
Subclass Accession number: 1377
Subclass: 5.4.1 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 12.7 +/- 14.2
Average RMSD (Å) : 0.745 +/- 0.263

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: hphXXXpXp
(φψ)-conformation: bbaaabpaa
Pattern: x[iklv][deknprst][ailptv][aegknrs][degknqs][acfiklmtv][degpst]x[ADEQRST][adeqs][afilmvw]x[adegknqrs]
Conservation:-1.0000.674-0.305-0.168-0.119-0.942-0.5661.100-1.5611.9621.343-0.108-0.787-0.522
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a53_*_1291a53   -131144LLIVKILTERELESEEEGGGS-HHHHHHxbbaaabxaaaaaa
1be9_A_3651be9   A365377.VDLRNASHEQAAI.EE-TT--HHHHHH.xxaaaxxaaaaaa
1cbf_*_701cbf   -7184VLKTAGMHLEEMVGEEE-TT--HHHHHHbbxaaabxaaaaaa
1ckm_A_1541ckm   A154166.VTVSQMDLASRFF.EE-TTS-HHHHHH.xxaaaxxaaaaaa
1dki_A_1581dki   A159172QINRGDFSKQDWEAEEEGGGS-HHHHHHxbbaaabxaaaaaa
1g9o_A_651g9o   A6577.ENVEKETHQQVVS.EE-TT--HHHHHH.bxaaaxxaaaaaa
1gpj_A_41gpj   A821GITHKEAEVEELEKEEETTTS-HHHHHHebbaaabxaaaaaa
1i4n_A_1271i4n   A129142LIIARILTAEQIKEEEEGGGS-HHHHHHbbxaaabxaaaaaa
1ihj_A_771ihj   A7789.KDVRNSTEQAVID.EE-TT--HHHHHH.bxaaaxxaaaaaa
1k75_A_61k75   A619IIDWNSCTAEQQRQEEEGGGS-HHHHHHxbxaaaxxaaaaaa
1kwa_A_5421kwa   A542554.ISVANQTVEQLQK.EEGGGS-HHHHHH.xxaaabbaaaaaa
1l2t_A_671l2t   A6779.IKTNDLDDDELTK.EE-TT--HHHHHH.bxaaaxxaaaaaa
1nf3_C_2211nf3   C221233.IEVSGKSLDQVTD.EESTT--HHHHHH.bxaaabxaaaaaa
1nqk_A_731nqk   A7790ALRPSVTSPTVAAREE-TTTS-HHHHHHxbbaaabxaaaaaa
1ny5_A_1911ny5   A193206ALNVASIPRDIFEAEEETTTS-HHHHHHbbxaaabpaaaaaa
1o1z_A_581o1z   A5972DVKIRDATVSELKEEEEGGGS-HHHHHHxbxaaabxaaaaaa
1p4o_A_11431p4o   A11431156LLPVRWMSPESLKDEE-GGG--HHHHHHxbxaaaxxaaaaaa
1q3o_A_6561q3o   A656668.QNVVKVGHRQVVN.EE-TT--HHHHHH.bxaaaxxaaaaaa
1qau_A_701qau   A7082.RPLVDLSYDSALE.EE-TTS-HHHHHH.bxaaabxaaaaaa
1qav_A_1351qav   A135147.EDLSSATHDEAVQ.EE-TT--HHHHHH.xxaaaxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a53_*_1291a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE L - 131
1a53_*_1291a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE I - 133
1gpj_A_41gpj   A     GLUGLUTAMIC ACID H - 11
1k75_A_61k75   A     MSESELENOMETHIONINE Q - 17
1k75_A_61k75   A     MSESELENOMETHIONINE R - 18
1k75_A_61k75   A     MSESELENOMETHIONINE Q - 19
1k75_A_61k75   A     MSESELENOMETHIONINE L - 20
1ny5_A_1911ny5   A     MGMAGNESIUM ION N - 195
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1be9_A_3651be9   A PEPRESIDUES INVOLVED IN THE BINDING OF THE FOUR C-TERMINAL RESIDUES OF CRIPT.H - 372
1be9_A_3651be9   A PEPRESIDUES INVOLVED IN THE BINDING OF THE FOUR C-TERMINAL RESIDUES OF CRIPT.L - 379
1cbf_*_701cbf   * P-4PRECORRIN-4 BINDING SITE IN DEEP TROUGH. ALSO, LOCATION OF BOUND PHOSPHATE RESIDUE 401. PHOSPHATE PRESENT FROM CRYSTALLIZATION CONDITIONS.L - 79

Clusters included in this Subclass
CLUSTER: EH.4.28
CLUSTER: EH.5.13
CLUSTER: EH.6.31
CLUSTER: EH.6.8