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Information on SUBCLASS 2.3.6
Subclass Accession number: 138
Subclass: 2.3.6 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 48725 (>75 %)  48726 (>75 %)  48942 (>75 %)  
 Number of loops: 7

Average sequence ID (%) : 16.7 +/- 15.9
Average RMSD (Å) : 0.614 +/- 0.157

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XphDhh
(φψ)-conformation: aapabb
Pattern: [AFGIL]xx[FLVY][ckrs][DHKNY][aly][DH][ailv][AILTV][GLTV][fimtv]
Conservation:-0.730-0.468-0.8790.605-0.0610.073-0.5452.875-0.3220.288-0.455-0.382
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ax4_A_2461ax4   A251262FDMYKYADALTMHHHGGG-SEEEEaaaaaababbbb
1bg6_*_691bg6   -7081GLAVKDADVILIHHHHTT-SEEEEaaaaaaxabbbb
1e79_D_3201e79   D323334ATTFAHLDATTVHHHGGG-SEEEEaaaaaababbbx
1moq_*_4531moq   -458469AEDFSDKHHALFHHHHTT-SEEEEaaaaaaxabbbb
1nwc_A_611nwc   A6172IEELKKLDIIVTHHHHTT-SEEEEaaaaaaxabbbb
1rcu_A_901rcu   A91102FVLLRNADVVVSHHHHTT-SEEEEaaaaaababbbb
1uqt_A_1691uqt   A173184LEQLCDYDLLGFHHHHTTSSEEEEaaaaaaxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ax4_A_2461ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) M - 262
1ax4_A_2461ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 263
1e79_D_3201e79   D     ATPADENOSINE-5'-TRIPHOSPHATE F - 326
1rcu_A_901rcu   A     MSESELENOMETHIONINE S - 90
1rcu_A_901rcu   A     MSESELENOMETHIONINE F - 91
1rcu_A_901rcu   A     MSESELENOMETHIONINE V - 92
1rcu_A_901rcu   A     MSESELENOMETHIONINE L - 93
1rcu_A_901rcu   A     MSESELENOMETHIONINE R - 95
1rcu_A_901rcu   A     MSESELENOMETHIONINE D - 98
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ax4_A_2461ax4   A LPAPYRIDOXAL 5-PHOSPHATE BINDING SITE.S - 263

Clusters included in this Subclass
CLUSTER: HE.4.129
CLUSTER: HE.4.200
CLUSTER: HE.5.72
CLUSTER: HE.6.132