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Information on SUBCLASS 2.5.1
Subclass Accession number: 152
Subclass: 2.5.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 53

Average sequence ID (%) : 10.4 +/- 13.4
Average RMSD (Å) : 0.706 +/- 0.220

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XXXpXX
(φψ)-conformation: aababb
Pattern: [afgilmvwy]x[adegknqrs]xx[dehknpqrs]xxxx
Conservation:0.581-0.9111.079-0.7580.3042.023-1.164-0.273-0.652-0.230
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8y_*_231a8y   -2635VFKKYEVLALHHHH-SEEEEaaaababbbb
1aop_*_3751aop   -382391IAKIHKGDFRHHHH-SSEEEaaaaxabbbb
1b7g_O_711b7g   O7483LIKTSDIVVDHHHH-SEEEEaaaaxabbxx
1c7q_A_551c7q   A6877IRNHSDALVVHHHH-SEEEEaaaababbbx
1cb6_A_11451cb6   A11491157VARFFSASC.HHHHSSEEE.aaaaxabbb.
1cg2_A_1831cg2   A189198EAKLADYVLSHHHH-SEEEEaaaaxabbbb
1dlj_A_3671dlj   A370378FKKQANIIV.HHHH-SEEE.aaaaxabbb.
1f0k_A_2481f0k   A251260AYAWADVVVCHHHH-SEEEEaaaaxabbbb
1f0x_A_3791f0x   A384393WRDKYEHHLLHHHH-SEEEEaaaababbbx
1f5a_A_3671f5a   A367376FFQKYKHYIVHHHH-SEEEEaaNababbbb
1guq_A_1241guq   A141150LGKTYPWVQVHHHH-SEEEEaaaababbbx
1hkk_A_1971hkk   A200209IAQNLDFVNLHHHH-SEEEEaaaaxabbxx
1hyu_A_3651hyu   A374383LAGIVEHVTLHHHHBSEEEEaaaababbbb
1iae_*_241iae   -3746LEEKTCIRFVHHHHSS-EEEaaaabaxbxb
1iib_A_441iib   A4756KGQNADVVLLHHTT-SEEEEaaaaxabbbb
1inl_A_2121inl   A222231ISKVFPITRVHHHH-SEEEEaaaaxabbbx
1itx_A_2641itx   A267276IAAIVDWINIHHHHSSEEEEaaaaxabbxx
1iup_A_2291iup   A235244LGELIDRAQLHHHH-TTEEEaaaaxaxbbb
1izo_A_1051izo   A125133RWEKADEVV.HHTTSSEEE.aaaaxabbb.
1j23_A_641j23   A7180LKEAYSRPIMHHHH-SEEEEaaaababxbb
1jbw_A_3481jbw   A355364LTAAFSTVYLHHHH-SEEEEaaaababbbb
1ji0_A_1981ji0   A201210ALKVAHYGYVHHHH-SEEEEaaaaxabbbb
1jih_A_1291jih   A142151FKSACDLVERHHHH-S-EEEaaaababbbx
1jk3_A_1271jk3   A141150WSNVTPLKFSHHTTSS-EEEaaaabaxbbb
1jx6_A_1411jx6   A147156VLDSTNTKLIHHHH-S-EEEaaaabaxxbb
1k3s_A_531k3s   A6271LNYTSAVTIGHHHHSSSEEEaaaaxabxbb
1ll2_A_451ll2   A5160LEIVFDEVITHHHH-SEEEEaaaababbbb
1m44_A_951m44   A107116MRGAYQLGALHHHH-SEEEEaaaababxbb
1m6s_A_1831m6s   A186195YAGYADSVMFHHHT-SEEEEaaaababbbb
1mdw_A_3281mdw   A331340FLRHYSRLEIHHHH--EEEEaaaaxabbbb
1mjf_A_1991mjf   A209218MKKVFDRVYYHHHH-SEEEEaaaaxabbbb
1moq_*_4531moq   -460469DFSDKHHALFHHTT-SEEEEaaaaxabbbb
1nnf_A_2521nnf   A258266LVAARAEYP.HHHHS--EE.aaaabaxxx.
1nox_*_751nox   -7584HVEEAPVVLVHHHHSSEEEEaaaaxabbxb
1nv8_A_1341nv8   A139148VAKFSDAIVFHHHHSS-EEEaaaabaxxbb
1o8x_A_741o8x   A8088YFAKMPWLA.HHTT-SSEE.aaaababbb.
1oth_A_1241oth   A131140LSSMADAVLAHHHH-SEEEEaaaababbbb
1oth_A_1451oth   A151160LAKEASIPIIHHHH-SS-EEaaaaxabpbb
1owl_A_191owl   A2433ARAQSAQLIGHHHH-S-EEEaaaabaxbbx
1oxw_A_661oxw   A6675LADYFDVIGGHHHH-SEEEEaaaababbbb
1qam_A_431qam   A4857LVQRCNFVTAHHHHSSEEEEaaaababbbx
1qdl_A_121qdl   A1928IERDFKVAGLHHHH-SEEEEaaaababbbb
1qwt_A_3701qwt   A381390VGGASSLENTHHHT-SS-EEaaaabaxpbb
1r89_A_721r89   A8392GKAVLDSYEIHHHHSSSEEEaaaababbbx
1rif_A_1411rif   A152161YLENYEGKILHHHH-SSEEEaaaabaxbbb
1rjd_A_2091rjd   A219228IMSKFSHGLWHHHH-SSEEEaaaababbbb
1rjd_A_721rjd   A92101FLVANEKVQVHHHH-SSEEEaaaabaxbbb
1s4n_A_1661s4n   A172181VTKAVSSEVKHHHH-SS-EEaaaaxabxbb
1slm_*_1101slm   -124133WEEVTPLTFSHHTTSS-EEEaaaabaxbbb
1uir_A_2051uir   A213222VREAFRYVRSHHTT-SEEEEaaaababbbx
1v8a_A_501v8a   A5362MIRLADAVVIHHHH-SEEEEaaaaxabbbb
1vi9_A_1361vi9   A136143GLPASDII..HHHH-SEE..aaaaxabb..
2dap_*_1232dap   -131140AAAVLAEHQQHHHH-SSEEEaaaaxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f5a_A_3671f5a   A     MSESELENOMETHIONINE F - 368
1f5a_A_3671f5a   A     MSESELENOMETHIONINE Y - 374
1f5a_A_3671f5a   A     MSESELENOMETHIONINE I - 375
1f5a_A_3671f5a   A     MSESELENOMETHIONINE V - 376
1guq_A_1241guq   A     GUDGLUCOSE-URIDINE-C1,5'-DIPHOSPHATE F - 151
1guq_A_1241guq   A     GUDGLUCOSE-URIDINE-C1,5'-DIPHOSPHATE E - 152
1guq_A_1241guq   A     GUDGLUCOSE-URIDINE-C1,5'-DIPHOSPHATE N - 153
1hkk_A_1971hkk   A     AMIALLOSAMIZOLINE N - 208
1hkk_A_1971hkk   A     NAAN-ACETYL-D-ALLOSAMINE M - 210
1hkk_A_1971hkk   A     AMIALLOSAMIZOLINE M - 210
1itx_A_2641itx   A     GOLGLYCEROL N - 275
1itx_A_2641itx   A     GOLGLYCEROL I - 276
1izo_A_1051izo   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 111
1ji0_A_1981ji0   A     MSESELENOMETHIONINE V - 210
1ji0_A_1981ji0   A     MSESELENOMETHIONINE E - 212
1jx6_A_1411jx6   A     CACALCIUM ION E - 145
1jx6_A_1411jx6   A     CACALCIUM ION L - 148
1jx6_A_1411jx6   A     CACALCIUM ION D - 149
1k3s_A_531k3s   A     MSESELENOMETHIONINE T - 55
1k3s_A_531k3s   A     MSESELENOMETHIONINE F - 59
1m6s_A_1831m6s   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) M - 194
1m6s_A_1831m6s   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) C - 196
1m6s_A_1831m6s   A     CACALCIUM ION C - 196
1nnf_A_2521nnf   A     FEFE (III) ION R - 262
1nnf_A_2521nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID R - 262
1nnf_A_2521nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID E - 264
1nox_*_751nox   *     FMNFLAVIN MONONUCLEOTIDE H - 75
1nv8_A_1341nv8   A     SAMS-ADENOSYLMETHIONINE A - 134
1nv8_A_1341nv8   A     SAMS-ADENOSYLMETHIONINE I - 135
1nv8_A_1341nv8   A     SAMS-ADENOSYLMETHIONINE T - 150
1nv8_A_1341nv8   A     SAMS-ADENOSYLMETHIONINE D - 151
1oth_A_1241oth   A     PAON-(PHOSPHONOACETYL)-L-ORNITHINE R - 141
1oxw_A_661oxw   A     MSESELENOMETHIONINE D - 71
1r89_A_721r89   A     MNMANGANESE (II) ION R - 93
1rjd_A_721rjd   A     SAMS-ADENOSYLMETHIONINE R - 81
1rjd_A_721rjd   A     SAMS-ADENOSYLMETHIONINE N - 103
1rjd_A_721rjd   A     SAMS-ADENOSYLMETHIONINE L - 104
2dap_*_1232dap   *     API2,6-DIAMINOPIMELIC ACID W - 144

Clusters included in this Subclass
CLUSTER: HE.1.35
CLUSTER: HE.2.33
CLUSTER: HE.2.9
CLUSTER: HE.3.102
CLUSTER: HE.3.15
CLUSTER: HE.3.16
CLUSTER: HE.3.32
CLUSTER: HE.4.149
CLUSTER: HE.4.20
CLUSTER: HE.5.215