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Information on SUBCLASS 2.5.2
Subclass Accession number: 153
Subclass: 2.5.2 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 16.9 +/- 17.2
Average RMSD (Å) : 0.660 +/- 0.232

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XphDhh
(φψ)-conformation: aababb
Pattern: [ilt]x[ael][afgilmv]x[cekr][dekqry][acfly][DRS][afilv][ilvw]x
Conservation:0.685-0.796-0.089-0.798-0.7430.100-0.3580.0362.605-0.0550.600-1.187
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bg6_*_691bg6   -6980IGLAVKDADVILHHHHHTT-SEEEaaaaaaaxabbb
1cb6_A_11451cb6   A11461157EAAVARFFSASCHHHHHHHSSEEEaaaaaaaxabbb
1cnz_A_591cnz   A6172TVEGCEQADAILHHHHHHTSSEEEaaaaaaababbx
1d2k_A_2241d2k   A224235LAEMDKYLDFWNHHHHHTT-SEEEaaaaaaaxabbb
1ff9_A_591ff9   A6273LDAEVAKHDLVIHHHHHTTSSEEEaaaaaaababbb
1io7_A_3201io7   A331342IEEFSKRFRHIEHHHHHTT-SEEEaaaaaaababbb
1js1_X_931js1   X97108IPVMGCYCDIIGHHHHHHT-SEEEaaaaaaababbb
1jw9_B_1121jw9   B115126LAALIAEHDLVLHHHHHHTSSEEEaaaaaaababbb
1uqt_A_1691uqt   A172183LLEQLCDYDLLGHHHHHTTSSEEEaaaaaaaxabbb
2dnj_A_192dnj   A2536IVRIVRRYDIVLHHHHHHT-SEEEaaaaaaababbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1io7_A_3201io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 320
1io7_A_3201io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 322
1io7_A_3201io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 323
1io7_A_3201io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 324
1io7_A_3201io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 326
1js1_X_931js1   X     PO4PHOSPHATE ION R - 110
2dnj_A_192dnj   A     NAGN-ACETYL-D-GLUCOSAMINE A - 19
2dnj_A_192dnj   A     NAGN-ACETYL-D-GLUCOSAMINE T - 20
2dnj_A_192dnj   A     NAGN-ACETYL-D-GLUCOSAMINE L - 21

Clusters included in this Subclass
CLUSTER: HE.2.84
CLUSTER: HE.3.42
CLUSTER: HE.4.114