ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.3.1

Subclass Accession number: 1627
Subclass: 1.3.1

PSSM

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
SCOP : 51181 (>75 %) 51182 (>75 %)

Number of loops: 9

Average sequence ID (%) : 19.9 +/- 18.1
Average RMSD (Å) : 0.511 +/- 0.136

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XpGph
(φψ)-conformation:	abebb

Pattern:	x	[AFGIVY]	[filmy]	[ACIV]	x	[eknqs]	[G]	[CEKQST]	[AFGLW]	[ailmtv]	[FGILV]	x
Conservation:	-0.502	-0.280	-0.389	0.630	-0.547	-0.113	2.973	-0.184	-0.553	-0.208	-0.061	-0.766

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dgw_A_107	1dgw	A	109	120	LVLVLEGQAILV	EEEEEESEEEEE	xxbxabebbbxb
1fi2_A_95	1fi2	A	96	107	IGMVMKGELLVG	EEEEEESEEEEE	bbbxabebbxbb
1h4a_X_34	1h4a	X	34	45	SARVDSGCWMLY	EEEEEESEEEEE	bbbxabebbbxb
1juh_A_72	1juh	A	74	85	NFYCNKGSFQLW	EEEEEESEEEEE	bbbxabebbxbb
1o4t_A_66	1o4t	A	69	80	IYYILLGEGVFH	EEEEEESEEEEE	bbbxabebebxb
1od5_A_67	1od5	A	68	79	MIIVVQGKGAIG	EEEEEE-EEEEE	bbbxabebbbbb
1oki_A_184	1oki	A	184	195	SVKVSSGTWVGY	EEEEEESEEEEE	bbbxabebbbxb
1pmi_*_382	1pmi	-	383	394	IVIATNGKGTIQ	EEEEEESEEEEE	bbbxabebbbbb
1vj2_A_58	1vj2	A	59	70	EIFVLKGKLTVL	EEEEEESEEEEE	bbbxabebbxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fi2_A_95	1fi2	A	MNMANGANESE (II) ION	E - 95
1juh_A_72	1juh	A	EDO1,2-ETHANEDIOL	Y - 72
1juh_A_72	1juh	A	CUCOPPER (II) ION	E - 73
1juh_A_72	1juh	A	EDO1,2-ETHANEDIOL	E - 73
1juh_A_72	1juh	A	CUCOPPER (II) ION	F - 75
1juh_A_72	1juh	A	EDO1,2-ETHANEDIOL	F - 75
1juh_A_72	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 83
1juh_A_72	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 85
1o4t_A_66	1o4t	A	OXLOXALATE ION	E - 66
1o4t_A_66	1o4t	A	MNMANGANESE (II) ION	E - 68
1o4t_A_66	1o4t	A	OXLOXALATE ION	E - 68
1o4t_A_66	1o4t	A	MNMANGANESE (II) ION	Y - 70
1o4t_A_66	1o4t	A	OXLOXALATE ION	Y - 70
1od5_A_67	1od5	A	CO3CARBONATE ION	Q - 67
1od5_A_67	1od5	A	CO3CARBONATE ION	I - 69
1vj2_A_58	1vj2	A	MNMANGANESE (II) ION	H - 58

Clusters included in this Subclass

CLUSTER: AR.2.33