ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.3.1

Subclass Accession number: 164
Subclass: 3.3.1
Type: HH alpha-alpha
DB: ArchDB-KI

Number of loops: 4

Average sequence ID (%) : 100.0 +/- 0.0
Average RMSD (Å) : 0.14 +/- 0.04

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 45-90

rho (°): 0-45

Consensus Sequence:	QCGGSWR
(φψ)-conformation:	aagpbaa

Pattern:	[L]	[A]	[M]	[L]	[A]	[A]	[I]	[R]	[R]	[V]	[Y]	[G]	[L]	[L]	[A]	[N]	[T]	[V]	[R]	[Y]	[L]	[Q]	[C]	[G]	[G]	[S]	[W]	[R]	[E]	[D]
Conservation:	-0.737	-0.737	-0.123	-0.737	-0.737	-0.737	-0.737	-0.123	-0.123	-0.737	1.106	0.492	-0.737	-0.737	-0.737	0.492	-0.123	-0.737	-0.123	1.106	-0.737	-0.123	2.335	0.492	0.492	-0.737	3.564	-0.123	-0.123	0.492

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1kim_A_229	1kim	A	229	258	LAMLAAIRRVYGLLANTVRYLQCGGSWRED	HHHHHHHHHHHHHHHHHHHHHHTT--HHHH	aaaaaaaaaaaaaaaaaaaaaaavpbaaaa
1qhi_A_229	1qhi	A	229	258	LAMLAAIRRVYGLLANTVRYLQCGGSWRED	HHHHHHHHHHHHHHHHHHHHHHTT--HHHH	aaaaaaaaaaaaaaaaaaaaaaavxbaaaa
1vtk_*_229	1vtk	-	229	258	LAMLAAIRRVYGLLANTVRYLQCGGSWRED	HHHHHHHHHHHHHHHHHHHHHHTT--HHHH	aaaaaaaaaaaaaaaaaaaaaaavxbaaaa
2ki5_A_229	2ki5	A	229	258	LAMLAAIRRVYGLLANTVRYLQCGGSWRED	HHHHHHHHHHHHHHHHHHHHHHTT--HHHH	aaaaaaaaaaaaaaaaaaaaaaagxbaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kim_A_229	1kim	A	THMTHYMIDINE	M - 231
1vtk_*_229	1vtk	*	TMPTHYMIDINE-5'-PHOSPHATE	M - 231
2ki5_A_229	2ki5	A	AC29-HYROXYETHOXYMETHYLGUANINE	M - 231

Clusters included in this Subclass