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Information on SUBCLASS 2.6.6
Subclass Accession number: 164
Subclass: 2.6.6 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0046914 (>75 %)  
SCOP : 51734 (>75 %)  51735 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 11.5 +/- 13.2
Average RMSD (Å) : 1.025 +/- 0.096

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXXXX
(φψ)-conformation: aabpbb
Pattern: [AGL][GKMT][AVY][EL][AKQR]xxx[ARS]xx[DKNP]xxxx
Conservation:-0.616-1.1930.9771.2031.2270.119-1.0720.6011.425-0.549-0.5880.622-1.193-0.974-1.0721.084
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1hyu_A_2661hyu   A270285AGALKAHVSDYDVDVIHHHHHHHHHTS-EEEEaaaaaaaaaabxbxxb
1m3q_A_1521m3q   A157172GMVERLCQAFGPRLIQHHHHHHHHHHS-EEEEaaaaaaaaaaxxxabb
1r1m_A_921r1m   A98113LKVLAQRLSRTNIQSVHHHHHHHHTTS-EEEEaaaaaaaaaabxxabb
1sqh_A_1991sqh   A199214LTYLQALVRFNKSLGIHHHHHHHHHHS-EEEEaaaaaaaaaabxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m3q_A_1521m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE I - 152
1m3q_A_1521m3q   A     ANG8-AMINOGUANINE I - 152
1m3q_A_1521m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE A - 153
1m3q_A_1521m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE I - 155
1m3q_A_1521m3q   A     ANG8-AMINOGUANINE I - 155
1sqh_A_1991sqh   A     MSESELENOMETHIONINE Y - 201
1sqh_A_1991sqh   A     MSESELENOMETHIONINE L - 202
1sqh_A_1991sqh   A     MSESELENOMETHIONINE L - 205
1sqh_A_1991sqh   A     MSESELENOMETHIONINE K - 210
1sqh_A_1991sqh   A     MSESELENOMETHIONINE S - 211
1sqh_A_1991sqh   A     MSESELENOMETHIONINE L - 212

Clusters included in this Subclass
CLUSTER: HE.3.97