Logo
Information on SUBCLASS 3.2.10
Subclass Accession number: 1696
Subclass: 3.2.10 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003676 (>75 %)  GO:0003723 (>75 %)  GO:0003735 (>75 %)  GO:0019843 (>75 %)  
SCOP : 50192 (>75 %)  50193 (>75 %)  50194 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 9.3 +/- 15.2
Average RMSD (Å) : 0.825 +/- 0.189

Consensus geometry
d (Å): 15 delta (°): 0-45 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: phXcXXX
(φψ)-conformation: bbabpbb
Pattern: [ERTY][AIKV][KNRY][FLP][ADE][DEN][CNP]xx
Conservation:-0.810-0.566-0.077-0.4701.1082.181-0.316-0.238-0.810
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bi5_A_181bi5   A2432TANPANCVEEE--S-EEEbbbpaxxbx
1dv1_A_1981dv1   A201209EKYLENPRHEE--SS-EEbxxbabxbb
1jj2_J_871jj2   J8795RVKFEDNAAEE--SS-EEbbbbabbbb
1whi_*_761whi   -7684YIRFDENACEE--SS-EEbbbbabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dv1_A_1981dv1   A     PO4PHOSPHATE ION E - 211
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1whi_*_761whi   * R1THIS SITE, WHICH IS LOCATED NEAR THE N-TERMINUS AT THE BASE OF THE BETA BARREL, IS PROPOSED TO INTERACT WITH 23S RRNA. IT CONTAINS TYROSINE 32 WHICH FORMS A CROSS-LINK TO 23S RRNA.Y - 76
1whi_*_761whi   * R1THIS SITE, WHICH IS LOCATED NEAR THE N-TERMINUS AT THE BASE OF THE BETA BARREL, IS PROPOSED TO INTERACT WITH 23S RRNA. IT CONTAINS TYROSINE 32 WHICH FORMS A CROSS-LINK TO 23S RRNA.R - 78

Clusters included in this Subclass
CLUSTER: AR.4.113