Logo
Information on SUBCLASS 3.5.1
Subclass Accession number: 1723
Subclass: 3.5.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 51350 (>75 %)  51395 (>75 %)  51396 (>75 %)  
Number of loops: 51

Average sequence ID (%) : 11.3 +/- 14.4
Average RMSD (Å) : 0.598 +/- 0.185

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XhXXXXX
(φψ)-conformation: bbpplbb
Pattern: x[acfilmptv]xx[dgnqrst]xx[agiklmtv]x
Conservation:-0.6831.761-0.618-0.2351.222-1.045-0.6060.204-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amu_A_3501amu   A350358APIQNTQIYEE-TTEEEEbpxpvbbbb
1b9w_A_261b9w   A2937RCLLYFKEDEE-TTEEEEbxxpvbbxb
1bag_*_4091bag   -413421TINARSVAVEE-TTEEEEbxxplbbbb
1cb8_A_5021cb8   A503511KTGRGKITTEE-TT-EEEbxxxvbbbb
1cb8_A_5091cb8   A513521KAQGQFWLLEE-TTEEEExxxpvxbbb
1ee6_A_441ee6   A4553RLEAGASLKEE-TTEEEEbbxxvxbbb
1ep0_A_1111ep0   A113121FIPEGFAHGEE-TTEEEExbxpgbxbb
1ext_A_1361ext   A138146TCHAGFFLREE-TTEEEEbxxpgbbxb
1f3l_A_4791f3l   A489497PVKAGEALKEE-TT-EEEwbbpvxbbx
1fxj_A_2731fxj   A273281EIDTNVIIEEE-TTEEEEbbxxlxbbb
1fxj_A_2781fxj   A285292TLGHRVKI.EE-TT-EE.bbxxlxbb.
1g1t_A_1391g1t   A143149KCDPGFS..EE-TTEE..bxxpvbb..
1g38_A_3561g38   A359366LPKEGVRL.EE-TTEEE.bxxpvxbb.
1gl4_A_3801gl4   A383390RCVANYTG.EE-TTEEE.bxxpvbbe.
1gtt_A_2571gtt   A257265LTGDNQTSVEE-TTEEEExbxxlbbbx
1gw0_A_4781gw0   A480488MLPAGGWLLEE-TTSEEExxwxvbbbb
1gwy_A_621gwy   A6270FVPNTKALLEE-TTEEEEbbxpvbbxb
1h2k_A_2701h2k   A272280YIPMYWWHHEE-TT-EEExbxpvxxbb
1hdf_A_491hdf   A5159KVGPNTKAFEE-TTEEEEbbxxlbbbb
1hdf_A_701hdf   A7279RLEESSQV.EE-TTEEE.xbxplbbb.
1j0m_A_7401j0m   A742750SADPGITVTEE-TTEEEEbbxxgbbxa
1j1l_A_2101j1l   A211219KIEPHHTAVEE-TTEEEExbxpvbbbx
1jsd_A_2191jsd   A226234VLKPGQTLREE-TT-EEEbxxpgxbbb
1juh_A_1031juh   A105113SVPRNVTHTEE-TTEEEEbbppvbxbb
1kwg_A_6331kwg   A633641RVGPYDLAVEE-TTEEEExxxxvbbbb
1l6p_A_281l6p   A3442QIKDGYYLYEE-TTEEEExbppvbbxx
1lci_*_3641lci   -364372KVVPFFEAKEE-TT-EEEbxxpvbbbb
1ly2_A_931ly2   A97105ACKTNFSMNEE-TTEEEEbxxpvbbxb
1mjs_A_3311mjs   A332340KIPPGCNLKEE-TT-EEEbbxpvxbbx
1mox_C_291mox   C3339VCHSGYV..EE-TTEE..bpxpvbb..
1nx9_A_6021nx9   A605613VFAKGHRIMEE-TT-EEEbxxxvxbxb
1nxm_A_1171nxm   A120128FVPRGVANGEE-TTEEEExbxpgxxbb
1od5_A_461od5   A5159TLNRNGLHLEE-TTEEEEbbxpvxbxp
1ogm_X_2671ogm   X269277YLAPGAYVKEE-TTEEEEbbxxvxbbx
1p2z_A_781p2z   A8694AVGDNRVLDEE-TT--EExbxxlbbbx
1pkh_A_1331pkh   A133141WIDAGFKGKEE-TT-EEExbxpvpbex
1poc_*_401poc   -4047VMSAGESK.EE-TT-EE.bbxpvxbb.
1pp7_U_1021pp7   U105111WKRSGFT..EE-TTEE..bbbxvbb..
1qre_A_1201qre   A126133AVGDDTFI.EE-TT-EE.bbxplbxb.
1qre_A_1321qre   A132140FIGMQAFVFEE-TT-EEExbxpvxbbb
1qre_A_1381qre   A143150KVGNNCVL.EE-TT-EE.bxxxlbbb.
1qw9_A_4841qw9   A488496TLPKLSWNVEE-SSEEEExbpplbbbb
1qxr_A_1271qxr   A129137YVPPYWAHREE-TT-EEExxxpvxxbb
1r0w_A_4391r0w   A447455NIEKGEMLAEE-TT-EEEbbxpvxbbb
1ro2_A_1681ro2   A172180LQSYNSYVLEE-TT-EEEbxbpvbbbx
1sox_A_4111sox   A418426PVEAGTELEEE-TT-EEEwbxpvbbbb
1tdt_A_1391tdt   A139146MVDTWATV.EE-TTEEE.bbxpvxbb.
1tdt_A_2261tdt   A226234RVPAGSVVVEE-TTEEEEbbppvxbbb
1uhv_A_4621uhv   A468476KLGKNAVVLEE-TTEEEEbxxplxbbb
1ule_A_21ule   A412HLFVNNQVKEE-TTEEEEbxxxlbbbx
1uyr_A_19851uyr   A19881996YIPPTGELREE-TT-EEEbxwxvxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ext_A_1361ext   A     MGMAGNESIUM ION R - 146
1h2k_A_2701h2k   A     FE2FE (II) ION I - 273
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE I - 273
1h2k_A_2701h2k   A     FE2FE (II) ION H - 279
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE H - 279
1h2k_A_2701h2k   A     FE2FE (II) ION I - 281
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE I - 281
1h2k_A_2701h2k   A     OGAN-OXALYOLGLYCINE E - 282
1hdf_A_491hdf   A     MSESELENOMETHIONINE V - 50
1hdf_A_491hdf   A     MSESELENOMETHIONINE A - 58
1hdf_A_491hdf   A     MSESELENOMETHIONINE F - 59
1hdf_A_491hdf   A     CACALCIUM ION F - 59
1hdf_A_491hdf   A     MSESELENOMETHIONINE I - 60
1hdf_A_491hdf   A     CACALCIUM ION I - 60
1hdf_A_491hdf   A     MSESELENOMETHIONINE F - 61
1hdf_A_491hdf   A     CACALCIUM ION F - 61
1juh_A_1031juh   A     CUCOPPER (II) ION V - 106
1juh_A_1031juh   A     EDO1,2-ETHANEDIOL P - 107
1juh_A_1031juh   A     NAGN-ACETYL-D-GLUCOSAMINE R - 108
1juh_A_1031juh   A     EDO1,2-ETHANEDIOL R - 108
1juh_A_1031juh   A     NAGN-ACETYL-D-GLUCOSAMINE N - 109
1juh_A_1031juh   A     EDO1,2-ETHANEDIOL N - 109
1juh_A_1031juh   A     CUCOPPER (II) ION H - 112
1juh_A_1031juh   A     EDO1,2-ETHANEDIOL H - 112
1juh_A_1031juh   A     EDO1,2-ETHANEDIOL F - 114
1ly2_A_931ly2   A     NAGN-ACETYL-D-GLUCOSAMINE T - 100
1ly2_A_931ly2   A     NAGN-ACETYL-D-GLUCOSAMINE N - 101
1ly2_A_931ly2   A     NAGN-ACETYL-D-GLUCOSAMINE F - 102
1ly2_A_931ly2   A     NAGN-ACETYL-D-GLUCOSAMINE N - 105
1mox_C_291mox   C     CDCADMIUM ION H - 35
1mox_C_291mox   C     CDCADMIUM ION Y - 38
1mox_C_291mox   C     PTPLATINUM (II) ION V - 39
1od5_A_461od5   A     CO3CARBONATE ION R - 50
1od5_A_461od5   A     CO3CARBONATE ION L - 52
1od5_A_461od5   A     CO3CARBONATE ION H - 58
1p2z_A_781p2z   A     CITCITRIC ACID D - 94
1pkh_A_1331pkh   A     EGLETHYLENE GLYCOL K - 139
1pkh_A_1331pkh   A     EGLETHYLENE GLYCOL G - 140
1poc_*_401poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE V - 40
1qre_A_1201qre   A     OCNCOBALT ION, 2 WATERS COORDINATED Q - 120
1qre_A_1201qre   A     BCTBICARBONATE ION H - 122
1qre_A_1201qre   A     OCNCOBALT ION, 2 WATERS COORDINATED H - 122
1qre_A_1201qre   A     OCNCOBALT ION, 2 WATERS COORDINATED G - 123
1qxr_A_1271qxr   A     NINICKEL (II) ION H - 136
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID H - 136
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID R - 137
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID T - 138
1ro2_A_1681ro2   A     MNMANGANESE (II) ION Q - 173
1uyr_A_19851uyr   A     D1L2-[4-(2,4-DICHLOROPHENOXY)PHENOXY]PROPANOIC ACID R - 1996
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gw0_A_4781gw0   A GC9SO4 BINDING SITE FOR CHAIN BR - 492
1h2k_A_2701h2k   A FE1FE BINDING SITE FOR CHAIN AH - 279
1h2k_A_2701h2k   A OGAOGA BINDING SITE FOR CHAIN AI - 281
1od5_A_461od5   A AC1CO3 BINDING SITE FOR CHAIN AR - 50
1od5_A_461od5   A AC1CO3 BINDING SITE FOR CHAIN AH - 58

Clusters included in this Subclass
CLUSTER: AR.2.154
CLUSTER: AR.2.22
CLUSTER: AR.2.69
CLUSTER: AR.3.21
CLUSTER: AR.3.50
CLUSTER: AR.4.100
CLUSTER: AR.4.12
CLUSTER: AR.4.205
CLUSTER: AR.4.31
CLUSTER: AR.5.19