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Information on SUBCLASS 3.6.1
Subclass Accession number: 1730
Subclass: 3.6.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 41

Average sequence ID (%) : 14.3 +/- 15.9
Average RMSD (Å) : 0.456 +/- 0.148

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XhXXhXX
(φψ)-conformation: bbppgbb
Pattern: [afgilmvy]x[acfilv][adeknqrs]x[gnqs]xxxx
Conservation:0.607-0.8662.053-0.2250.1301.193-0.759-0.472-0.807-0.853
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a34_A_371a34   A4554VSVQSGIAFKEE--TT--EEbxbbxvbxbx
1aoz_A_2541aoz   A254263IDIYSGESYSEEE-TT-EEEbxbbpgxbbb
1e43_A_4671e43   A470479FHVNGGSVSIEEE-TT-EEExbbxxlbbbb
1ee6_A_441ee6   A4453FRLEAGASLKEEE-TTEEEEbbbxxvxbbb
1fi2_A_731fi2   A7786VDFAPGGTNPEEE-TT-EEEbbbxpvxbxx
1g40_A_1551g40   A155164YSCNSGYSLIEEE-TT-EEEbbbxxgbbxb
1g5a_A_6151g5a   A615624LTLQPYQVMWEEE-TT-EEEbbxxpvxbbb
1gjw_A_6181gjw   A624633VVLKPLEFALEEE-TT-EEEbbxxxvbbbb
1gw0_A_2651gw0   A265274LFLAVGQRYDEEE-TT-EEEbxbxpvxbbx
1h03_P_921h03   P95104YACNKGFTMIEEE-TT-EEEbbxxpvbbxb
1h54_A_2431h54   A246255GKLAPQASAEEEE-TT-EEEebbxpvxbbb
1hfu_A_1861hfu   A187196VNVEQGKKYREEE-TT-EEEbxbbpvxbbx
1hfu_A_2351hfu   A235244LQIFTGQRYSEEE-TT-EEEbbbxpvxbbx
1hx6_A_1531hx6   A153161.TIAAGATGE.EE-TT-EEE.bbxpvxbbb
1iby_A_391iby   A4049LVVKKGDAVKEEEETT-EEEbbbbpvxxbb
1iby_A_691iby   A7180EVIKAGETKTEEE-TT-EEEbbbxpvbbbx
1j0m_A_7401j0m   A741750YSADPGITVTEEE-TTEEEEbbbxxgbbxa
1j1l_A_1691j1l   A174183FKLDPGAKHSEEE-TT-EEEbbbxpvxbbb
1ji2_A_5681ji2   A571580LTLRPYQGMIEEE-TT-EEEbbbxplxbbb
1jmm_A_5941jmm   A598607VLLERGQSATEEE-TT-EEEbbbbpgxbbb
1jmx_A_2931jmx   A293301.FIKAGGESE.EEETT-EEE.bbxxvbbbx
1kbv_A_721kbv   A7281IRVREGDTVEEEEETT-EEEbbbbpgxbbx
1ktb_A_3691ktb   A372381VIINPSGVVMEEE-TT-EEEbbbxpUbbbb
1kv7_A_2731kv7   A273282LPVLMGERFEEEE-TT-EEEbpbxxvxbbb
1l4i_A_1651l4i   A165174TMVPPQGKVTEEE-TT-EEEbbbxpvbbbb
1lk9_A_401lk9   A4046.ECNTCYT...EE-TTEE...bxxpvbb..
1m53_A_5841m53   A585594LSLSPWQAGVEEE-TT-EEEbxxxplxbbb
1m56_B_1981m56   B198207MVVPVNKTVVEEEETT-EEExxbxpvbxbb
1nbc_A_1001nbc   A100108.TLEPGAHVQ.EE-TT-EEE.bbxpvxbbb
1o6u_A_2801o6u   A282291VQISRGSSHQEEE-TT-EEEbbbxpvbbbb
1od5_A_3681od5   A372381VVLYRNGIYSEEE-TT-EEEbbbxpvxbxp
1od5_A_4211od5   A422431LVVPQNFVVAEEE-TT-EEEbxbxpvxxbb
1oe1_A_2271oe1   A227236LTAKVGETVLEEEETT-EEExbbbpvxbbb
1oe1_A_671oe1   A6776LVVHEGDYVQEEEETT-EEEbbbbpvxbxb
1ofn_A_481ofn   A5261SMSKRGVVRGEEE-TTBEEEbbbxpvxbbe
1ok3_A_281ok3   A3139YKCEESFVK.EEE-TT-EE.bbxxpvbbx.
1r75_A_921r75   A97106VDVRPLETQMEEE-TT-EEEbbbxpvxbbx
1six_A_351six   A3544VELAPGRRALEEE-TT-EEEbbbxpvxbbb
1uas_A_3441uas   A347356ASVAPHDCKMEEE-TT-EEEbxbxpvxbbb
1uok_*_5441uok   -545554ITLRPYEAMVEEE-TT-EEEbxxxpUxbbb
4ubp_B_744ubp   B7584ARFEPGEEMEEEE-TT-EEEbbbxpvxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aoz_A_2541aoz   A     CUCOPPER (II) ION G - 259
1aoz_A_2541aoz   A     C2OCU-O-CU LINKAGE G - 259
1e43_A_4671e43   A     CACALCIUM ION Q - 482
1fi2_A_731fi2   A     MNMANGANESE (II) ION N - 85
1fi2_A_731fi2   A     MNMANGANESE (II) ION H - 88
1gw0_A_2651gw0   A     CUCOPPER (II) ION G - 270
1hfu_A_2351hfu   A     CUCOPPER (II) ION G - 240
1hx6_A_1531hx6   A     MPD2-METHYL-2,4-PENTANEDIOL W - 167
1jmm_A_5941jmm   A     MSESELENOMETHIONINE G - 596
1jmm_A_5941jmm   A     MSESELENOMETHIONINE S - 597
1ktb_A_3691ktb   A     NAGN-ACETYL-D-GLUCOSAMINE N - 369
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL N - 369
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL F - 370
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL T - 371
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL V - 372
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL I - 373
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL V - 380
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL M - 381
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL W - 382
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL Y - 383
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL L - 384
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL C - 385
1ktb_A_3691ktb   A     CRYPROPANE-1,2,3-TRIOL P - 386
1kv7_A_2731kv7   A     CUCOPPER (II) ION G - 278
1kv7_A_2731kv7   A     C2OCU-O-CU LINKAGE G - 278
1o6u_A_2801o6u   A     MSESELENOMETHIONINE Q - 291
1od5_A_3681od5   A     MGMAGNESIUM ION Q - 370
1od5_A_3681od5   A     MGMAGNESIUM ION V - 372
1od5_A_3681od5   A     MGMAGNESIUM ION Y - 380
1od5_A_3681od5   A     MGMAGNESIUM ION H - 383
1od5_A_3681od5   A     MGMAGNESIUM ION N - 385
1od5_A_4211od5   A     MGMAGNESIUM ION V - 430
1od5_A_4211od5   A     MGMAGNESIUM ION E - 432
1od5_A_4211od5   A     MGMAGNESIUM ION Y - 441
1od5_A_4211od5   A     MGMAGNESIUM ION V - 443
1od5_A_4211od5   A     MGMAGNESIUM ION K - 445
1oe1_A_671oe1   A     PCAPYROGLUTAMIC ACID Y - 74
1ofn_A_481ofn   A     GOLGLYCEROL T - 49
1ofn_A_481ofn   A     GOLGLYCEROL I - 50
1ofn_A_481ofn   A     GOLGLYCEROL H - 51
1uas_A_3441uas   A     GOLGLYCEROL P - 351
1uas_A_3441uas   A     GOLGLYCEROL H - 352
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od5_A_3681od5   A AC4MG BINDING SITE FOR CHAIN BH - 383
1od5_A_4211od5   A AC4MG BINDING SITE FOR CHAIN BE - 432
1od5_A_4211od5   A AC4MG BINDING SITE FOR CHAIN BY - 441

Clusters included in this Subclass
CLUSTER: AR.3.117
CLUSTER: AR.3.8
CLUSTER: AR.4.7
CLUSTER: AR.5.13
CLUSTER: AR.5.139