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Information on SUBCLASS 2.8.4
Subclass Accession number: 174
Subclass: 2.8.4 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003723 (>75 %)  
SCOP : 54861 (>75 %)  54928 (>75 %)  54929 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 8.3 +/- 13.8
Average RMSD (Å) : 0.500 +/- 0.115

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 0-45 rho (°): 180-225
Consensus Sequence: XXXXpp
(φψ)-conformation: aappbb
Pattern: xx[AIVY]xx[NSV]xxx[KQRS]
Conservation:0.810-0.7090.473-1.072-1.1820.553-0.1310.783-1.1821.655
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f8r_A_3101f8r   A313322AHALRSVHYRHHHHHH--EEaaaaaapxbb
1ihg_A_1561ihg   A159168AKILENVEVKHHHHHTS-EEaaaaaaxxbb
1nbf_A_3601nbf   A363372SFVDYVAVEQHHHHHT--EEaaaaaaxxbx
1nc5_A_3381nc5   A338347YDYYVSRERSHHHHHTS-EEaaaaaaxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f8r_A_3101f8r   A     CITCITRIC ACID R - 322
1ihg_A_1561ihg   A     GOLGLYCEROL M - 156
1ihg_A_1561ihg   A     GOLGLYCEROL G - 157
1ihg_A_1561ihg   A     GOLGLYCEROL K - 160

Clusters included in this Subclass
CLUSTER: HE.2.111
CLUSTER: HE.4.230