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Information on SUBCLASS 2.8.6
Subclass Accession number: 176
Subclass: 2.8.6 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0000287 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 1.9 +/- 3.9
Average RMSD (Å) : 0.833 +/- 0.231

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: pphXXX
(φψ)-conformation: aappbb
Pattern: [AGP]x[FIK]x[AEM][FIK]x[KRT][HNQ][CLV][EKP][FHW][IKL]x[AFV][AIY][ALY]x
Conservation:0.3030.621-0.981-1.141-0.499-0.981-0.6600.9461.9090.9460.9461.909-0.339-0.981-0.178-0.339-0.339-1.141
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1kkh_A_1821kkh   A182199GEFEEFLKNCKFLIVYAEHHHHHHHHT--EEEEEEEeaaaaaaaaxbbbxbxab
2stv_*_132stv   -1532AVKRMINTHLEHKRFALIHHHHHHHTTS-EEEEEEEaaaaaaaaaxxxxbbbbb
3pvi_A_883pvi   A88105PVIIAKYRQVPWIFAIYRHHHHHHHHTS-EEEEEEEaaaaaaaaabxbbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
2stv_*_132stv   *     CACALCIUM ION E - 25
2stv_*_132stv   *     CACALCIUM ION K - 27

Clusters included in this Subclass
CLUSTER: HE.4.87