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Information on SUBCLASS 2.8.7
Subclass Accession number: 177
Subclass: 2.8.7 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 12.1 +/- 12.4
Average RMSD (Å) : 0.800 +/- 0.300

Consensus geometry
d (Å): 15 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XpXhXX
(φψ)-conformation: aappbb
Pattern: xx[KQ]xx[HKN]x[FP][GIT]xx
Conservation:-0.128-0.4892.020-0.910-1.3300.9820.5870.840-0.910-0.279-0.384
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b35_A_451b35   A4555IRQLIKRFGIFHHHHTTS-EEEaaaaaaxxbxb
1ek9_A_2211ek9   A239249QAQDGHLPTLDHHHGGGS-EEEaaaaaaxxbbb
1sw6_A_4051sw6   A419429IVKKQNRPIQSHHHGGG--EEEaaaaaabxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ek9_A_2211ek9   A     MSESELENOMETHIONINE D - 242
1ek9_A_2211ek9   A     MSESELENOMETHIONINE L - 245
1ek9_A_2211ek9   A     MSESELENOMETHIONINE P - 246
1ek9_A_2211ek9   A     MSESELENOMETHIONINE G - 255
1ek9_A_2211ek9   A     MSESELENOMETHIONINE I - 256
1ek9_A_2211ek9   A     MSESELENOMETHIONINE S - 257

Clusters included in this Subclass
CLUSTER: HE.4.225