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Information on SUBCLASS 4.1.2
Subclass Accession number: 1779
Subclass: 4.1.2 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0000166 (>75 %)  GO:0008603 (>75 %)  GO:0016208 (>75 %)  GO:0017076 (>75 %)  GO:0019207 (>75 %)  GO:0019887 (>75 %)  GO:0030551 (>75 %)  GO:0030552 (>75 %)  GO:0030554 (>75 %)  
SCOP : 51181 (>75 %)  51206 (>75 %)  51210 (>75 %)  
 Number of loops: 35

Average sequence ID (%) : 16.5 +/- 17.7
Average RMSD (Å) : 0.543 +/- 0.256

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hXXcXXhX
(φψ)-conformation: bbpgppbb
Pattern: x[acfilmtv][adenpqst]x[agnst][adegkqrst]x[fhilvwy]x[afilmvwy]
Conservation:-0.8630.678-0.371-0.5742.504-0.309-0.255-0.341-0.8140.346
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ahs_A_2151ahs   A216225NVAAGDVVAWEE-TT--EEExbxxvxxbxb
1clc_*_601clc   -6069GFIPNHSKKAEE-TTS--EEebbpvbpbbb
1dgw_A_1371dgw   A139148KIQAGTPFYLEE-TT--EEExbppvxwbbb
1fi2_A_1281fi2   A130139VIPRGLMHFQEE-TT--EEEbbppvxxbbb
1flt_X_1441flt   X147156HMTEGRELVIEE-TTS-EEExbbpvbxbbb
1gl4_B_17791gl4   B17811790SVRPGADVTFEE-TT--EEEbbxpgxbbbb
1gtt_A_521gtt   A5361PFPQGEKVL.EE-TT--EE.xxxxgxbbb.
1ijq_A_4871ijq   A491500FRENGSKPRAEE-TT--EEEbbbxvxbxax
1itw_A_4441itw   A449458SVEAGDIWRMEE-TT-EEEExbbpvxbbbb
1juh_A_3001juh   A302311FIPGGVEFKYEE-TT--EEEbbwxvbxbbb
1k5c_A_1551k5c   A157165VSANNVTIQ.EE-SSEEEE.bbbxvbbbb.
1kdj_*_181kdj   -2029TVSAGEAVEFEE-TT--EEEbbxpvxxbbx
1kv7_A_2801kv7   A286295EVNDNKPFDLEE-TT--EEExbbpvbwbbx
1l0q_A_3171l0q   A317326YIFLSEPVQFEEETT--EEEbbxpvxxbbb
1lrh_A_971lrh   A99108SIPVNDPHQVEE-TT--EEEbxppvxxbbb
1mju_H_91mju   H1120LVKPGASVKLEE-TT--EEExbxpvxbbbx
1mju_L_101mju   L1221PVTPGESVSIEE-TTS-EEEwbxpvxxbbb
1nez_G_141nez   G1524DAELGQKVDLEE-TT--EEEbxxpvxxbbb
1nkr_*_1171nkr   -117126TVLAGENVTLEE-TT-EEEEbbxpgxxxbb
1nlf_A_271nlf   A2735.MVAGTVGAL.EETTSEEEE.bxxvbbbbb
1o4t_A_931o4t   A95104FTDSGESHSIEE-TT-EEEEbbxpvxbbbb
1oaq_L_91oaq   L1120TTSPGETVTLEE-TT-EEEEbbbpvxxbbb
1od5_A_1211od5   A124133VIPPGVPYWTEE-TT--EEEbbxpvbwbbb
1ofz_A_1531ofz   A161170STAPGTGIGAEESTT--EEEbbpxlpxbbb
1pg6_A_191pg6   A2231DLEHGGSVYLEE-TT--EEEbbxpvxbbxb
1pmi_*_4101pmi   -412421FVAPGSSIELEE-TT--EEExbxpvxxbbb
1qqr_A_1831qqr   A187195TLAIGDTIT.EE-TT-EEE.bbbpgxbbb.
1qxr_A_1271qxr   A129138YVPPYWAHRTEE-TT-EEEExxxpvxxbbb
1uol_A_1321uol   A134143FCQLAKTCPVEE-TT--EEEbbxplxxbwb
1vj2_A_831vj2   A8594FVEPNEIHGFEE-TT--EEEbbxpvxxbbb
1zxq_*_991zxq   -99108LVAVGKSFTIEE-TTSEEEEbbxpvbxbbx
2arc_A_712arc   A7382LFPPGEIHHYEE-TT--EEEbbxpvxxbbb
2f5b_H_112f5b   H1120LVKPTQTLTLEE-TTS-EEEbbxpvxbbbb
2fbj_H_102fbj   H1120LVQPGGSLKLEE-TT--EEExbxpvxbbbb
2fcb_A_1012fcb   A101110EFQEGETIVLEE-TT--EEEbbbxgxxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fi2_A_1281fi2   A     MNMANGANESE (II) ION I - 131
1fi2_A_1281fi2   A     MNMANGANESE (II) ION H - 137
1fi2_A_1281fi2   A     MNMANGANESE (II) ION Q - 139
1k5c_A_1551k5c   A     NAGN-ACETYL-D-GLUCOSAMINE N - 160
1k5c_A_1551k5c   A     NAGN-ACETYL-D-GLUCOSAMINE N - 161
1lrh_A_971lrh   A     ZNZINC ION I - 100
1lrh_A_971lrh   A     ZNZINC ION H - 106
1lrh_A_971lrh   A     NLANAPHTHALEN-1-YL-ACETIC ACID H - 106
1lrh_A_971lrh   A     NLANAPHTHALEN-1-YL-ACETIC ACID V - 108
1mju_H_91mju   H     5HPPYROGLUTAMIC ACID S - 25
1o4t_A_931o4t   A     MNMANGANESE (II) ION H - 102
1o4t_A_931o4t   A     OXLOXALATE ION H - 102
1od5_A_1211od5   A     CO3CARBONATE ION Y - 131
1od5_A_1211od5   A     CO3CARBONATE ION W - 132
1od5_A_1211od5   A     CO3CARBONATE ION T - 133
1ofz_A_1531ofz   A     FULBETA-L-FUCOSE W - 153
1ofz_A_1531ofz   A     AFLALPHA-L-FUCOSE W - 153
1ofz_A_1531ofz   A     FULBETA-L-FUCOSE A - 155
1ofz_A_1531ofz   A     FULBETA-L-FUCOSE G - 156
1ofz_A_1531ofz   A     FULBETA-L-FUCOSE A - 157
1ofz_A_1531ofz   A     AFLALPHA-L-FUCOSE I - 173
1pg6_A_191pg6   A     MSESELENOMETHIONINE V - 19
1pg6_A_191pg6   A     MSESELENOMETHIONINE I - 21
1pg6_A_191pg6   A     CACALCIUM ION I - 21
1pg6_A_191pg6   A     MSESELENOMETHIONINE D - 22
1pg6_A_191pg6   A     CACALCIUM ION D - 22
1pg6_A_191pg6   A     MSESELENOMETHIONINE L - 23
1pg6_A_191pg6   A     CACALCIUM ION L - 23
1pg6_A_191pg6   A     MSESELENOMETHIONINE E - 24
1pg6_A_191pg6   A     CACALCIUM ION E - 24
1pg6_A_191pg6   A     MSESELENOMETHIONINE G - 26
1pg6_A_191pg6   A     MSESELENOMETHIONINE G - 27
1pg6_A_191pg6   A     CACALCIUM ION G - 27
1pg6_A_191pg6   A     MSESELENOMETHIONINE S - 28
1pg6_A_191pg6   A     CACALCIUM ION S - 28
1pg6_A_191pg6   A     MSESELENOMETHIONINE V - 29
1pg6_A_191pg6   A     CACALCIUM ION V - 29
1pg6_A_191pg6   A     MSESELENOMETHIONINE L - 31
1pg6_A_191pg6   A     CACALCIUM ION L - 31
1pg6_A_191pg6   A     MSESELENOMETHIONINE Q - 32
1qxr_A_1271qxr   A     NINICKEL (II) ION H - 136
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID H - 136
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID R - 137
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID T - 138
1vj2_A_831vj2   A     MNMANGANESE (II) ION H - 92
1vj2_A_831vj2   A     MNMANGANESE (II) ION F - 94
1zxq_*_991zxq   *     NAGN-ACETYL-D-GLUCOSAMINE F - 106
1zxq_*_991zxq   *     NAGN-ACETYL-D-GLUCOSAMINE T - 107
2arc_A_712arc   A     ARAALPHA-L-ARABINOSE H - 80
2arc_A_712arc   A     ARAALPHA-L-ARABINOSE Y - 82
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od5_A_1211od5   A AC1CO3 BINDING SITE FOR CHAIN AY - 131
1od5_A_1211od5   A AC1CO3 BINDING SITE FOR CHAIN AT - 133
1ofz_A_1531ofz   A AC2AFL BINDING SITE FOR CHAIN AW - 153
1uol_A_1321uol   A MUAMUTATION SITE FOR CHAIN AL - 133

Clusters included in this Subclass
CLUSTER: AR.3.154
CLUSTER: AR.4.137
CLUSTER: AR.4.32
CLUSTER: AR.5.10
CLUSTER: AR.6.1