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Information on SUBCLASS 4.2.1
Subclass Accession number: 1782
Subclass: 4.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 36

Average sequence ID (%) : 7.8 +/- 10.7
Average RMSD (Å) : 0.622 +/- 0.299

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: hXXXXhXX
(φψ)-conformation: bpaaapbb
Pattern: x[acfgilmtv][dehknprst]xxx[acfilvw]xxxx
Conservation:-0.9010.6650.228-0.638-0.113-0.3272.265-0.174-1.004-1.000-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amu_A_4231amu   A426435LGRIDNQVKI.EEEGGGEEEE.aexaaaxbxb.
1b12_A_2871b12   A287296.VPEANLVGRA.EEGGGEEEEE.bxaaaxabbx
1btk_A_481btk   A5565SIDVEKITCVEEEEGGGEEEEEbbxaaaxabbb
1dj7_B_611dj7   B6472HFRPDEVTL..EE-GGGEEE..bbxaaabbp..
1dxr_H_1931dxr   H195203LIPLGFCDV..EEEGGG-EE..xbxaaabxx..
1et9_A_1911et9   A191201RIDSTQFHVDVEEETTSEEEEEbbxaaabbbbb
1eys_H_1921eys   H194203LLPIGFSRFD.EEEGGG-EEE.xbxaaabbbb.
1f1b_B_1441f1b   B144152EFSHNVVLA..EEETTT-EE..bbxaaNxxb..
1flm_A_261flm   A3039NTWNSYLKVL.EEEGGG-EEE.bbbaaaxbxb.
1g31_A_681g31   A7079SLPVGQIRNV.EEEGGG-EEE.bbxaaabbxb.
1gsa_*_341gsa   -3746YMEMGDLYLI.EE-GGGEEEE.xbbaaaxbbb.
1h2b_A_1401h2b   A142150RTSHRSVIK..EE-GGGEEE..xbbaaaxbx..
1hav_A_651hav   A6777SISAGNVVIQSEEEGGG-EEEEbbxaaabbbbx
1hs6_A_1861hs6   A196206PIPCYLIALVVEE-GGG--EEEwbxaaaxbbbb
1hyo_A_1061hyo   A107116FTSQASATMH.EEESTT-EEE.bbxaaaxbxb.
1i7n_A_1401i7n   A146156QAEFSELNLVAEE-GGGEEEEEbbxaaabbbbb
1igq_A_3421igq   A344354EANLADVKLVAEEEGGG-EEEExbxaaabbxab
1iz0_A_841iz0   A8694AVPKGALLP..EEEGGG-EE..xbxaaaxbx..
1j48_A_771j48   A8090SVDCATAACNLEEETTTS--EEbbbaaaxxxbb
1jb0_E_571jb0   E5967NFALHEVQE..EE-GGGEEE..bbxaaabbx..
1jj2_P_801jj2   P8593IVTAAHLRR..EE-GGGEEE..xbxaaabbx..
1khc_A_2761khc   A278286EISADKLVA..EEEGGG-EE..xbxaaabbx..
1kk8_A_661kk8   A6876TVKKDDIQS..EEEGGG-EE..bbpaaaxbx..
1krh_A_791krh   A7987YVLACQCRP..EEETTT-EE..xbbaaaxbx..
1l5p_A_741l5p   A7482ARLACAITL..EEEGGG-EE..xbxaaabxx..
1lpl_A_2081lpl   A210218FVRPVDVKV..EE-GGGEEE..bbxaaabbb..
1m4v_A_1901m4v   A190200VIDGRNIEKMEEEEGGGEEEEEbbxaaaxabbb
1mww_A_971mww   A103111EQPAHCWGF..EE-GGG-EE..bbwaaabbb..
1ntv_A_1041ntv   A107117HHAVHEISYIAEE-GGGEEEEEbbxaaaxabbb
1o7j_A_1591o7j   A160168IGSARYITK..EEETTT-EE..bbxaaaxbx..
1q52_A_1701q52   A173181LASREYARF..EETTT-EEE..bbxaaapbb..
1rjw_A_1231rjw   A125133RAAADYVVK..EEEGGG-EE..xbxaaaxbx..
1rzh_H_1881rzh   H190198LLPMQMVKV..EEEGGG-EE..bbpaaabbx..
1uuf_A_1321uuf   A134142VVHERYVLR..EEEGGG-EE..bbpaaabbx..
1vj1_A_1061vj1   A108117ILDGNGLEKV.EEEGGG-EEE.bbxaaabbxb.
2mcm_*_432mcm   -4555GCDATTSTDVTEEETTT-EEEEbbxaaaxbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1amu_A_4231amu   A     AMPADENOSINE MONOPHOSPHATE Y - 425
1amu_A_4231amu   A     AMPADENOSINE MONOPHOSPHATE G - 427
1amu_A_4231amu   A     AMPADENOSINE MONOPHOSPHATE R - 428
1dj7_B_611dj7   B     SULSULFATE ANION K - 62
1dj7_B_611dj7   B     SULSULFATE ANION H - 64
1f1b_B_1441f1b   B     ZNZINC ION F - 145
1flm_A_261flm   A     FMNFLAVIN MONONUCLEOTIDE H - 27
1flm_A_261flm   A     FMNFLAVIN MONONUCLEOTIDE L - 28
1flm_A_261flm   A     FMNFLAVIN MONONUCLEOTIDE V - 29
1flm_A_261flm   A     FMNFLAVIN MONONUCLEOTIDE N - 30
1flm_A_261flm   A     FMNFLAVIN MONONUCLEOTIDE T - 31
1flm_A_261flm   A     FMNFLAVIN MONONUCLEOTIDE W - 32
1flm_A_261flm   A     FMNFLAVIN MONONUCLEOTIDE Y - 35
1iz0_A_841iz0   A     MSESELENOMETHIONINE R - 84
1iz0_A_841iz0   A     MSESELENOMETHIONINE V - 85
1krh_A_791krh   A     FESFE2/S2 (INORGANIC) CLUSTER L - 81
1krh_A_791krh   A     FESFE2/S2 (INORGANIC) CLUSTER A - 82
1krh_A_791krh   A     FESFE2/S2 (INORGANIC) CLUSTER C - 83
1krh_A_791krh   A     FESFE2/S2 (INORGANIC) CLUSTER Q - 84
1l5p_A_741l5p   A     FESFE2/S2 (INORGANIC) CLUSTER L - 76
1l5p_A_741l5p   A     FESFE2/S2 (INORGANIC) CLUSTER A - 77
1l5p_A_741l5p   A     FESFE2/S2 (INORGANIC) CLUSTER C - 78
1l5p_A_741l5p   A     FESFE2/S2 (INORGANIC) CLUSTER A - 79
1mww_A_971mww   A     GLUGLUTAMIC ACID E - 98
1vj1_A_1061vj1   A     MSESELENOMETHIONINE K - 106
1vj1_A_1061vj1   A     MSESELENOMETHIONINE A - 107
1vj1_A_1061vj1   A     MSESELENOMETHIONINE I - 108
2mcm_*_432mcm   *     MPD2-METHYL-2,4-PENTANEDIOL I - 44
2mcm_*_432mcm   *     MPD2-METHYL-2,4-PENTANEDIOL C - 46
2mcm_*_432mcm   *     MPD2-METHYL-2,4-PENTANEDIOL T - 49
2mcm_*_432mcm   *     MPD2-METHYL-2,4-PENTANEDIOL T - 50
2mcm_*_432mcm   *     MPD2-METHYL-2,4-PENTANEDIOL S - 51
2mcm_*_432mcm   *     MPD2-METHYL-2,4-PENTANEDIOL T - 52

Clusters included in this Subclass
CLUSTER: AR.3.177
CLUSTER: AR.3.20
CLUSTER: AR.4.10
CLUSTER: AR.5.38
CLUSTER: AR.5.5