ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.4.3

Subclass Accession number: 1799
Subclass: 4.4.3

PSSM

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
EC : 3.2 (>50 %)  3.2.1 (>50 %)
GO : GO:0004553 (>50 %)  GO:0008270 (>50 %)  GO:0016160 (>50 %)  GO:0016798 (>50 %)
SCOP : 48725 (>50 %)

Number of loops: 11

Average sequence ID (%) : 13.3 +/- 16.1
Average RMSD (Å) : 0.709 +/- 0.212

Consensus geometry

d (Å): 5

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XhXXXXXX
(φψ)-conformation:	bbppgpbb

Pattern:	[fgilmtv]	x	[ILV]	[gkqs]	[ADGPT]	[gkqs]	[degq]	x	[aklmv]	[aciklv]	[fgilvy]	x
Conservation:	-0.304	-1.196	2.661	0.233	0.484	0.092	0.488	-0.868	-0.300	-0.389	0.030	-0.932

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f3l_A_479	1f3l	A	488	499	FPVKAGEALKGK	EEE-TT-EEEEE	bwbbpvxbbxbb
1f7d_A_26	1f7d	A	26	37	IHLLPGEVKVIP	EEE-TT-EEEEE	bbbxpvxbbxxx
1fwx_A_535	1fwx	A	537	548	MEIGPQMTSSVT	EEE-TT-EEEEE	bxbxpvxbbbbb
1g29_1_16	1g29	1	24	35	LEVKDGEFMILL	EEEETT-EEEEE	bbxxpvxbxbbb
1gjw_A_618	1gjw	A	624	635	VVLKPLEFALVV	EEE-TT-EEEEE	bbxxxvbbbbbb
1jsd_A_219	1jsd	A	225	236	SVLKPGQTLRVR	EEE-TT-EEEEE	bbxxpgxbbbbb
1pe9_A_272	1pe9	A	272	283	FGIGTSGSVLSE	EEE-TT-EEEEE	xbxxpUxbbbbb
1pm4_A_18	1pm4	A	23	34	GTIQGKGEVCII	EEE-TT-EEEEE	bbbxpvxbbbbx
1pmi_*_276	1pmi	-	277	288	MFLQAKDPHAYI	EEE-TT--EEEE	bbxxxvbxbbxa
1vh4_A_296	1vh4	A	303	314	TIVSDKGRAVFN	EEE-TT-EEEEE	bbbxpvxbbbbb
2viu_A_229	2viu	A	235	246	TIVKPGDVLVIN	EEE-TT-EEEEE	bbbxpvxbxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1g29_1_16	1g29	1	POPPYROPHOSPHATE 2-	A - 18
1g29_1_16	1g29	1	POPPYROPHOSPHATE 2-	V - 19
1pmi_*_276	1pmi	*	ZNZINC ION	L - 279
1pmi_*_276	1pmi	*	ZNZINC ION	H - 285
1pmi_*_276	1pmi	*	ZNZINC ION	Y - 287
1pmi_*_276	1pmi	*	ZNZINC ION	E - 294
2viu_A_229	2viu	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 242
2viu_A_229	2viu	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 244
2viu_A_229	2viu	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 246

Clusters included in this Subclass

CLUSTER: AR.3.42

CLUSTER: AR.4.200

CLUSTER: AR.5.186