Information on SUBCLASS 4.34.1 |
Subclass Accession number: 1853
Subclass: 4.34.1 Type: AR beta-beta link DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 3.2 (>75 %) 3.2.1 (>75 %) 3.2.1.52 GO : GO:0004553 (>75 %) GO:0015929 (>75 %) GO:0016798 (>75 %) SCOP : 51350 (>75 %) 51445 (>75 %) 51550 (>75 %) 55485 (>75 %) 55545 (>75 %) 55546 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 34.5 +/- 22.1 Average RMSD (Å) : 0.300 +/- 0.082 Consensus geometry
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Consensus Sequence: | pXPRhXXR |
(φψ)-conformation: | bbpababb |
Pattern: | [DST] | [AIL] | x | [DS] | [AST] | [P] | [R] | [FLY] | [APQS] | [HWY] | [R] | [GSV] | [AIV] | x |
Conservation: | -0.410 | -0.543 | -1.026 | 0.323 | -0.340 | 2.276 | 1.251 | 0.012 | -0.862 | 0.383 | 1.251 | -0.949 | -0.346 | -1.022 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gqi_A_145 | 1gqi | A | 145 | 158 | SLSSAPRLQHRVVN | EEEE--S-SEEEEE | bbbbbxababbbbb |
1jak_A_143 | 1jak | A | 144 | 157 | TIEDTPRYAWRSAM | EEEE--S-SEEEEE | bbbbbxababbbbb |
1now_A_187 | 1now | A | 193 | 206 | TIIDSPRFSHRGIL | EEEE--S-SEEEEE | bbbbbxababbbbx |
1qba_*_326 | 1qba | - | 331 | 344 | DASDAPRFPYRGIF | EEEE--S-SEEEEE | bbbbbxababbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gqi_A_145 | 1gqi | A | EDO1,2-ETHANEDIOL | L - 146 |
1gqi_A_145 | 1gqi | A | EDO1,2-ETHANEDIOL | S - 148 |
1jak_A_143 | 1jak | A | IFG(2R,3R,4S,5R)-2-ACETAMIDO-3,4-DIHYDROXY-5-HYDROXYMETHYL-PIPERIDINIUM | D - 159 |
1now_A_187 | 1now | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 190 |
1now_A_187 | 1now | A | GOLGLYCEROL | I - 195 |
1now_A_187 | 1now | A | GOLGLYCEROL | D - 196 |
1now_A_187 | 1now | A | IFG(2R,3R,4S,5R)-2-ACETAMIDO-3,4-DIHYDROXY-5-HYDROXYMETHYL-PIPERIDINIUM | D - 208 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gqi_A_145 | 1gqi | A | AC4EDO BINDING SITE FOR CHAIN A | S - 148 |
Clusters included in this Subclass |
CLUSTER: AR.5.105 |