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Information on SUBCLASS 5.13.1
Subclass Accession number: 1891
Subclass: 5.13.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 24 (>75 %)  3 (>75 %)  3.4.24 (>75 %)  3.4.24.404 (>75 %)  
GO : GO:0004222 (>75 %)  GO:0008237 (>75 %)  GO:0008270 (>75 %)  
SCOP : 51120 (>75 %)  51121 (>75 %)  51125 (>75 %)  
Number of loops: 10

Average sequence ID (%) : 12.0 +/- 15.2
Average RMSD (Å) : 1.020 +/- 0.266

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: phXXcpXhh
(φψ)-conformation: bbpplppbb
Pattern: xx[adeknrst]xx[ekp][dgns]xx[AGILTV][acgn]x
Conservation:-1.000-1.000-0.5990.368-1.7161.1051.638-0.556-1.0480.1190.3580.330
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bdo_*_1081bdo   -108117..KVNVGDTLCI..EE-TT-EEEE..xbbpvxxabb
1brw_A_3871brw   A387396..RVQKGEALAT..EE-TT-EEEE..xbbpvxxabb
1dpj_A_2021dpj   A202213EYAELESHGAAIEEEE-SS-EEEEbbbxbblxbbxx
1e0t_A_1501e0t   A150159.GDLGENKGVN..EEE-SS-EEE..bxxxxvxxbb.
1g24_A_1881g24   A191202KFKVAKGSKAGYEEEE-TT-B-EEbxxbxpvxxbbx
1giq_A_3541giq   A357368RINIPKDSPGAYEEEE-TT-S-EEbbxbxpvxxebx
1je5_A_111je5   A1121.GTAEPYAYIAK.EEE-SS-EEEE.bbxxxvxbaab
1ojq_A_1521ojq   A155166KLELPKGTKAAYEEEE-TT-B-EEbbxxxpvxxbbx
1rkd_*_871rkd   -8797.VSVIKGESTGV.EEEETT---EE.xxbxxvbbxpb
1sei_A_751sei   A7687KRISKPGLRVYVEE--BTTB--EEbxaxbpvbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bdo_*_1081bdo   *     BTNBIOTIN I - 117
1bdo_*_1081bdo   *     BTNBIOTIN E - 119
1dpj_A_2021dpj   A     NAGN-ACETYL-D-GLUCOSAMINE E - 202
1dpj_A_2021dpj   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 203
1rkd_*_871rkd   *     RIBRIBOSE V - 97
1rkd_*_871rkd   *     PO4PHOSPHATE ION V - 97
1rkd_*_871rkd   *     RIBRIBOSE A - 98
1rkd_*_871rkd   *     RIBRIBOSE I - 100
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1rkd_*_871rkd   * RB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE.A - 98
1rkd_*_871rkd   * RB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE.I - 100

Clusters included in this Subclass
CLUSTER: AR.5.36
CLUSTER: AR.6.120
CLUSTER: AR.7.56