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Information on SUBCLASS 5.17.2
Subclass Accession number: 1897
Subclass: 5.17.2 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005515 (>50 %)  
SCOP : 49348 (>50 %)  74857 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 16.7 +/- 15.8
Average RMSD (Å) : 1.000 +/- 0.361

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXXphXcXX
(φψ)-conformation: bbaapppbb
Pattern: x[IKV][IM]x[PS]x[HS][VY]x[GN]x[IT]
Conservation:-0.931-0.5361.014-0.8320.427-1.2261.6210.435-0.6351.449-1.0290.243
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoe_A_731aoe   A7485NIILSRSYENEIEEEE-TT---EExbbbbaaxxxbx
1jwy_B_1221jwy   B124135LKIYSPHVVNLTEEEEETTS-SEEbbbbbaabxxbb
1svp_A_1351svp   A135146KVMKPLHVKGTIEEEEETT--SEEbxbbxaaxxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aoe_A_731aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 77
1aoe_A_731aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 78
1aoe_A_731aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE R - 79
1aoe_A_731aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 80
1jwy_B_1221jwy   B     MGMAGNESIUM ION D - 138
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1svp_A_1351svp   A TRISINDBIS CAPSID PROTEIN HAS THE CATALYTIC TRIAD OF THE SERINE PROTEINASE. THE RESIDUES ARE SER 215, HIS 141, AND ASP 163 IN THE WILD-TYPE. IN THIS MUTANT STRUCTURE, THE ACTIVE SITE SER 215 WAS MUTATED TO ALA TO PREVENT AUTO-CATALYTIC CLEAVAGE BETWEEN TRP 264 AND SER 265.H - 141

Clusters included in this Subclass
CLUSTER: AR.5.68