Information on SUBCLASS 9.4.1 |
Subclass Accession number: 192
Subclass: 9.4.1 Type: HH alpha-alpha DB: ArchDB-KI |
Number of loops: 4 Average sequence ID (%) : 100.0 +/- 0.0 Average RMSD (Å) : 0.33 +/- 0.09 Consensus geometry
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Consensus Sequence: | AKRQRPGERLDLA |
(φψ)-conformation: | aabbppgpbpbaa |
Pattern: | [E] | [D] | [R] | [H] | [I] | [D] | [R] | [L] | [A] | [K] | [R] | [Q] | [R] | [P] | [G] | [E] | [R] | [L] | [D] | [L] | [A] | [M] | [L] | [A] | [A] | [I] | [R] | [R] | [V] | [Y] | [G] | [L] | [L] | [A] | [N] | [T] | [V] | [R] | [Y] | [L] | [Q] |
Conservation: | 0.024 | 0.988 | 0.024 | 2.918 | -0.941 | 0.988 | 0.024 | -0.941 | -0.941 | 0.024 | 0.024 | 0.024 | 0.024 | 1.953 | 0.988 | 0.024 | 0.024 | -0.941 | 0.988 | -0.941 | -0.941 | 0.024 | -0.941 | -0.941 | -0.941 | -0.941 | 0.024 | 0.024 | -0.941 | 1.953 | 0.988 | -0.941 | -0.941 | -0.941 | 0.988 | 0.024 | -0.941 | 0.024 | 1.953 | -0.941 | 0.024 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1kim_A_210 | 1kim | A | 210 | 250 | EDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQ | HHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHHHH | aaaaaaaaaabbxpgxbpbaaaaaaaaaaaaaaaaaaaaaa |
1qhi_A_210 | 1qhi | A | 210 | 250 | EDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQ | HHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHHHH | aaaaaaaaaabxxpvxbxbaaaaaaaaaaaaaaaaaaaaaa |
1vtk_*_210 | 1vtk | - | 210 | 250 | EDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQ | HHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHHHH | aaaaaaaaaaxbxxvxbxbaaaaaaaaaaaaaaaaaaaaaa |
2ki5_A_210 | 2ki5 | A | 210 | 250 | EDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQ | HHHHHHHHHHS--TT----HHHHHHHHHHHHHHHHHHHHHH | aaaaaaaaaabbxxvxbxbaaaaaaaaaaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1kim_A_210 | 1kim | A | THMTHYMIDINE | R - 222 |
1kim_A_210 | 1kim | A | THMTHYMIDINE | E - 225 |
1kim_A_210 | 1kim | A | THMTHYMIDINE | M - 231 |
1vtk_*_210 | 1vtk | * | ADPADENOSINE-5'-DIPHOSPHATE | R - 212 |
1vtk_*_210 | 1vtk | * | ADPADENOSINE-5'-DIPHOSPHATE | R - 216 |
1vtk_*_210 | 1vtk | * | ADPADENOSINE-5'-DIPHOSPHATE | L - 217 |
1vtk_*_210 | 1vtk | * | ADPADENOSINE-5'-DIPHOSPHATE | K - 219 |
1vtk_*_210 | 1vtk | * | ADPADENOSINE-5'-DIPHOSPHATE | R - 220 |
1vtk_*_210 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | R - 220 |
1vtk_*_210 | 1vtk | * | ADPADENOSINE-5'-DIPHOSPHATE | R - 222 |
1vtk_*_210 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | R - 222 |
1vtk_*_210 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | E - 225 |
1vtk_*_210 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | M - 231 |
2ki5_A_210 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | R - 222 |
2ki5_A_210 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | E - 225 |
2ki5_A_210 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | M - 231 |
Clusters included in this Subclass |
CLUSTER: HH.8.3 |