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Information on SUBCLASS 6.4.2
Subclass Accession number: 1934
Subclass: 6.4.2 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0030151 (>75 %)  GO:0046914 (>75 %)  
SCOP : 50684 (>75 %)  50692 (>75 %)  50696 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 18.5 +/- 24.2
Average RMSD (Å) : 0.400 +/- 0.100

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: hXXXhXXGXX
(φψ)-conformation: pbaapppgbb
Pattern: [KQS][IT][FIL][ATV]x[AV][KQY][PV][SV][AD][AER][IPV]x[KPR][G][AQ][IT][FQY]
Conservation:-0.004-0.0050.193-0.300-1.1860.282-0.300-0.160-0.5600.105-0.595-0.497-0.595-0.1033.739-0.005-0.005-0.004
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aa6_*_6331aa6   -634651KIITRAQVSDRPNKGAIYEEEEEEEEESSS-TTEEEbbbbxxbxbaaxxpgbbb
1eu1_A_6951eu1   A695712QILVGAKVSDAVMPGAIQEEEEEEEE-TTB-TTEEEbbxbbxbxbaaxxpvbbb
1g8k_A_7541g8k   A754771STFAMVYPVAEIKRGQTFEEEEEEEE-TTS-TTEEEbbbbxxbwbaaxxpvbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aa6_*_6331aa6   *     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE Y - 651
1eu1_A_6951eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE Q - 712
1g8k_A_7541g8k   A     OC2CALCIUM ION, 2 WATERS COORDINATED S - 754
1g8k_A_7541g8k   A     OC2CALCIUM ION, 2 WATERS COORDINATED T - 755
1g8k_A_7541g8k   A     OC2CALCIUM ION, 2 WATERS COORDINATED F - 756
1g8k_A_7541g8k   A     HGMERCURY (II) ION P - 761
1g8k_A_7541g8k   A     OC6CALCIUM ION, 6 WATERS COORDINATED E - 764
1g8k_A_7541g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE F - 771

Clusters included in this Subclass
CLUSTER: AR.6.122