ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.6.1

Subclass Accession number: 1936
Subclass: 6.6.1

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1 (>75 %)  11 (>75 %)
GO : GO:0004601 (>75 %)  GO:0005515 (>50 %)  GO:0016684 (>75 %)
SCOP : 49265 (>50 %)  49266 (>50 %)  52832 (>75 %)  52833 (>75 %)  52901 (>75 %)

Number of loops: 3

Average sequence ID (%) : 11.9 +/- 13.6
Average RMSD (Å) : 1.467 +/- 0.115

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hXXXpXXpXX
(φψ)-conformation:	bbpaabppbb

Pattern:	x	[IV]	[IP]	x	[GPS]	x	[KS]	x	x	[NSY]	x	x	x	[DPQ]
Conservation:	-1.351	2.733	-0.090	-0.428	-0.033	0.080	1.240	-0.956	-0.824	-0.033	-0.033	-0.239	-0.428	0.362

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aoe_A_73	1aoe	A	74	87	NIILSRSYENEIID	EEEE-TT---EEEE	xbbbbaaxxxbxab
1ogm_X_128	1ogm	X	128	141	VVIRPVSISYAISQ	EEEESTTS--EEEE	bbbbwaabxbxbbb
2bce_*_82	2bce	-	86	99	WVPQGRKEVSHDLP	EEEE-SSS---SEE	bbwbxaabxxblxx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aoe_A_73	1aoe	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	L - 77
1aoe_A_73	1aoe	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	S - 78
1aoe_A_73	1aoe	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	R - 79
1aoe_A_73	1aoe	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	S - 80

Clusters included in this Subclass

CLUSTER: AR.7.53