ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 7.1.1

Subclass Accession number: 1962
Subclass: 7.1.1

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.4.21 (>50 %)
GO : GO:0004252 (>75 %)  GO:0008236 (>75 %)
SCOP : 48726 (>75 %)  48727 (>75 %)  50493 (>75 %)  50494 (>75 %)  50514 (>75 %)

Number of loops: 19

Average sequence ID (%) : 34.4 +/- 23.8
Average RMSD (Å) : 0.437 +/- 0.130

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	hpchphpDXGX
(φψ)-conformation:	bblpbaaapeb

Pattern:	[ILMV]	[hnqrsty]	[FILMV]	[dehkqrsty]	[ADGKNS]	[AILTV]	[dknqrst]	x	[DEGNST]	[AD]	[aeknst]	[ADG]	x	[FRY]	x	[CFM]	x
Conservation:	0.759	-0.883	0.439	-0.892	-0.056	-0.155	-0.608	-1.107	-0.118	1.609	-0.472	0.982	-0.791	1.699	-1.087	1.628	-0.948

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ccz_A_62	1ccz	A	62	78	LTIYNLTSSDEDEYEME	EEE-S--GGG-EEEEEE	bbbblpbaaaxexbbbb
1cdy_*_69	1cdy	-	69	85	LIIKNLKIEDSDTYICE	EEE-S--GGG-EEEEEE	bbbblxbaaaxebbbbb
1cs6_A_264	1cs6	A	265	281	LHIQNVDFEDEGTYECE	EEE-S--GGG-EEEEEE	bbbxlxbaaaxebbbbb
1cs6_A_353	1cs6	A	354	370	LRFSKLVLEDSGMYQCV	EEESS--GGG-EEEEEE	bbxbvpbaaapexbbbb
1eaj_A_105	1eaj	A	105	121	INVTNLQLSDIGTYQCK	EEE-S--GGG-EEEEEE	bbbxlpbaaaxebbbbb
1epf_A_155	1epf	A	155	171	LQIRGIKKTDEGTYRCE	EEETT--GGG-EEEEEE	bbbxlpbaaaxexbbxb
1epf_A_59	1epf	A	62	78	LTIYNANIDDAGIYKCV	EEE-S--GGG-EEEEEE	bbbxlpbaaaxexxbbb
1f2q_A_52	1f2q	A	53	69	LNIVNAKFEDSGEYKCQ	EEE-S--GGG-EEEEEE	bbbblpbaaaxexbbbb
1gl4_B_1823	1gl4	B	1824	1840	LTIRNVQPSDAGTYVCT	EEE-S--GGG-EEEEEE	bbbblpbaaapexbbbb
1gsm_A_54	1gsm	A	57	73	LTVRNASLSAAGTRVCV	EEE-S--GGG-EEEEEE	xbbblpbaaaxexbbxb
1hkf_A_73	1hkf	A	76	92	VTMTDLREEDSGHYWCR	EEE-S--GGG-EEEEEE	xbbblpbaaaxexbbxb
1iil_E_215	1iil	E	216	232	LIMESVVPSDKGNYTCV	EEE-S--GGG-EEEEEE	bbbxlxbaaapebbbbb
1iil_E_326	1iil	E	327	343	LYIRNVTFEDAGEYTCL	EEE-S--GGG-EEEEEE	bbbblpbaaaxexbbbb
1kxv_C_77	1kxv	C	80	96	LQMDSLKPDDTAMYYCK	EEE-S--GGG-EEEEEE	bxbblxbaaapexxbxb
1neu_*_83	1neu	-	83	99	IVIHNLDYSDNGTFTCD	EEE-S--GGG-EEEEEE	bbbxlpbaaapebbbbb
1nko_A_108	1nko	A	108	124	LSIRDARMSDAGRYFFR	EEE-S--GGG-EEEEEE	bbbblpbaaaxebbbxb
1npu_A_72	1npu	A	75	91	MNILDTRRNDSGIYLCG	EEE-S--GGG-EEEEEE	bxxxlxbaaapebbbbb
1oga_D_72	1oga	D	75	91	LHITAAQPGDTGLYLCA	EEESS--GGG-EEEEEE	bbbxlpbaaapexbbbb
1qfo_A_81	1qfo	A	81	97	LLLKDLKPEDSGTYNFR	EEE-S--GGG-EEEEEE	bbbblpbaaaxebbbxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ccz_A_62	1ccz	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 65
1ccz_A_62	1ccz	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 66
1ccz_A_62	1ccz	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 68
1f2q_A_52	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 56
1f2q_A_52	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 57
1f2q_A_52	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 60
1f2q_A_52	1f2q	A	MANALPHA-D-MANNOSE	F - 60
1f2q_A_52	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 61
1f2q_A_52	1f2q	A	MANALPHA-D-MANNOSE	E - 61
1f2q_A_52	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 62
1f2q_A_52	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 63
1f2q_A_52	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 64
1f2q_A_52	1f2q	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 65
1gl4_B_1823	1gl4	B	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	V - 1838
1qfo_A_81	1qfo	A	SIAO-SIALIC ACID	R - 97
1qfo_A_81	1qfo	A	GALD-GALACTOSE	R - 97

Clusters included in this Subclass

CLUSTER: AR.7.0