ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 14.2.1

Subclass Accession number: 199
Subclass: 14.2.1
Type: HH alpha-alpha
DB: ArchDB-KI

Number of loops: 3

Average sequence ID (%) : 97.8 +/- 0.0
Average RMSD (Å) : 0.24 +/- 0.02

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	LLQVDLTKRFGNLKpGVN
(φψ)-conformation:	aapapaaappgapaaeaa

Pattern:	[S]	[D]	[L]	[K]	[D]	[L]	[L]	[R]	[N]	[L]	[L]	[Q]	[V]	[D]	[L]	[T]	[K]	[R]	[F]	[G]	[N]	[L]	[K]	[DN]	[G]	[V]	[N]	[D]	[I]	[K]
Conservation:	-1.028	1.215	-1.028	0.093	1.215	-1.028	-1.028	0.093	1.215	-1.028	-1.028	0.093	-1.028	1.215	-1.028	0.093	0.093	0.093	1.215	1.215	1.215	-1.028	0.093	-1.589	1.215	-1.028	1.215	1.215	-1.028	0.093

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1apm_E_263	1apm	E	263	292	SDLKDLLRNLLQVDLTKRFGNLKNGVNDIK	HHHHHHHHHHS-SSTTTSTTSSTTTTHHHH	aaaaaaaaaaaxaxaaaxpgabaaeaaaaa
1cdk_A_263	1cdk	A	263	292	SDLKDLLRNLLQVDLTKRFGNLKDGVNDIK	HHHHHHHHHHS-SSTTT-TTSSTTTTHHHH	aaaaaaaaaaaxaxaaaxxgaxaaeaaaaa
1ydr_E_263	1ydr	E	263	292	SDLKDLLRNLLQVDLTKRFGNLKDGVNDIK	HHHHHHHHHHT-SSTTT-TTSSTTTTHHHH	aaaaaaaaaaaxaxaaaxpgaxaaeaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1apm_E_263	1apm	E	OCTN-OCTANE	K - 292

Clusters included in this Subclass