ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 16.1.1

Subclass Accession number: 200
Subclass: 16.1.1
Type: HH alpha-alpha
DB: ArchDB-KI

Number of loops: 3

Average sequence ID (%) : 83.3 +/- 0.4
Average RMSD (Å) : 0.34 +/- 0.04

Consensus geometry

d (Å): 19

delta (°): 135-180

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	VDNPGHPhIXTVGhVAGDEE
(φψ)-conformation:	aabaebaappbalbbpabaa

Pattern:	[LV]	[D]	[DQ]	[CV]	[I]	[Q]	[T]	[G]	[V]	[D]	[N]	[P]	[G]	[H]	[P]	[FY]	[I]	[KM]	[T]	[V]	[G]	[CM]	[V]	[A]	[G]	[D]	[E]	[E]	[ST]	[Y]	[DE]	[V]
Conservation:	-1.526	0.780	-1.347	-1.437	-0.541	0.119	0.119	0.780	-0.541	0.780	0.780	1.440	0.780	2.101	1.440	-0.064	-0.541	-1.858	0.119	-0.541	0.780	-1.135	-0.541	-0.541	0.780	0.780	0.119	0.119	-1.379	1.440	-0.724	-0.541

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g0w_A_53	1g0w	A	53	84	VDDVIQTGVDNPGHPYIMTVGCVAGDEESYDV	HHHHHHHHHH----SS--B-----SSTTHHHH	aaaaaaaaaabaebaabxbavbbxabaaaaaa
1qh4_A_53	1qh4	A	53	84	LDDVIQTGVDNPGHPFIMTVGCVAGDEESYEV	HHHHHHHHHH----SSS-B-----SSTTHHHH	aaaaaaaaaabaebaaxxbavbbxabaaaaaa
1qk1_A_48	1qk1	A	48	79	LDQCIQTGVDNPGHPFIKTVGMVAGDEETYEV	HHHHHHHHHH----SSS-B-----SSTTHHHH	aaaaaaaaaabaebaaxxbavbbxabaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass