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Information on SUBCLASS 1.1.3
Subclass Accession number: 2027
Subclass: 1.1.3 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 64

Average sequence ID (%) : 9.9 +/- 12.8
Average RMSD (Å) : 0.530 +/- 0.174

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXpXX
(φψ)-conformation: aapaa
Pattern: xx[afilmvwy]x[adegknqrst][cdehknqrstwy][deknpqrst]x[afgilmvwy]x
Conservation:-0.555-0.7011.560-0.6320.8380.3211.577-0.728-0.581-1.098
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6j_A_1211a6j   A128137AKRLADKTICHHHHT-HHHHaaaaaxaaaa
1ajs_A_3011ajs   A307316ARTLSDPELFHHHHHSHHHHaaaaabaaaa
1chk_A_941chk   A102111ATAAKDTVFQHHHTTSHHHHaaaaaxaaaa
1d2t_A_1911d2t   A206215ATLHTNPAFQHHHHT-HHHHaaaaaxaaaa
1dmt_A_7141dmt   A720729GTLQNSAEFSHHHHT-HHHHaaaaabaaaa
1dv1_A_1071dv1   A110119IRLMGDKVSAHHHHHSHHHHaaaaabaaaa
1eb6_A_1561eb6   A157166QDALNNADSYHHHHTBHHHHaaaaabaaaa
1eem_A_1971eem   A204213AAMKEDPTVSHHHHT-HHHHaaaaaxaaaa
1ewq_A_1821ewq   A182191PELLENGAFLHHHHH-HHHHaaaaaxaaaa
1eyq_A_711eyq   A7281EELLETLDFYHHHHT-HHHHaaaaabaaaa
1f0k_A_711f0k   A7281KALIAAPLRIHHHHT-HHHHaaaaabaaaa
1f0l_A_1141f0l   A115124MEQVGTEEFIHHHHTSHHHHaaaaaxaaaa
1fp2_A_1721fp2   A177186LALRDCDFVFHHHHT-HHHHaaaaaxaaaa
1fpo_A_411fpo   A5867WQTLRHPLMRHHHHHSHHHHaaaaaxaaaa
1fqi_A_3001fqi   A301310SELIRDPKGRHHHHTSHHHHaaaaabaaaa
1gee_A_1971gee   A197206AEKFADPEQRHHHHHSHHHHaaaaaxaaaa
1gjw_A_2471gjw   A251260EIIYNKENVKHHHHTSHHHHaaaaaxaaaa
1hkk_A_1041hkk   A107116TDMVATANNRHHHHTSHHHHaaaaabaaaa
1hw1_A_1591hw1   A177186RHYFANPEARHHHTTSHHHHaaaaaxaaaa
1hwl_A_5991hwl   A606615KAWLETSEGFHHHHTSHHHHaaaaaxaaaa
1hwx_A_2111hwx   A224233ENFIENASYMHHHHT-HHHHaaaaabaaaa
1iqc_A_1071iqc   A112121KVVASMPQYRHHHHT-HHHHaaaaaxaaaa
1itx_A_1701itx   A171180SDVAATAATRHHHHTSHHHHaaaaabaaaa
1iyh_A_1721iyh   A179188KKVQAIPAVAHHHHHSHHHHaaaaaxaaaa
1j7n_A_2101j7n   A221230FAYYIEPQHRHHHHHSHHHHaaaaaxaaaa
1jdh_A_1821jdh   A186195HAIMRSPQMVHHHHT-HHHHaaaaabaaaa
1jog_A_81jog   A2231VVQISDRNWFHHHHH-HHHHaaaaaxaaaa
1k0d_A_3321k0d   A339348KHMMRRPAVIHHHHT-HHHHaaaaaxaaaa
1kek_A_11241kek   A11261135EFLMAQNRFAHHHHTBHHHHaaaaabaaaa
1l0l_B_3541l0l   B369378LMSVESSEGFHHHTSSHHHHaaaaaxaaaa
1l5x_A_1321l5x   A133142NELLNNKEAVHHHHT-HHHHaaaaabaaaa
1l9x_A_1771l9x   A178187KNFTMNEKLKHHHHT-HHHHaaaaabaaaa
1lm4_A_281lm4   A4150LVNSQDEEIAHHHHHSHHHHaaaaaxaaaa
1m7y_A_3071m7y   A314323SAMLSDKKLTHHHHH-HHHHaaaaaxaaaa
1m8z_A_8531m8z   A854863MEFSQDQHGSHHHHTSHHHHaaaaaxaaaa
1m8z_A_9251m8z   A926935LSLALQMYGCHHHHTSTTHHaaaaaxaaaa
1m8z_A_9971m8z   A9981007FALSTHPYGCHHHHTSTTHHaaaaabaaaa
1n2a_A_1761n2a   A183192QRMAERPEVQHHHHTSHHHHaaaaaxaaaa
1n8v_A_131n8v   A1423DEILANKRLLHHHHT-HHHHaaaaabaaaa
1nbf_A_2231nbf   A230239QTLFFTNQLRHHHHTSHHHHaaaaaxaaaa
1ngk_A_121ngk   A2433AQVAEDEVLRHHHHH-HHHHaaaaaxaaaa
1njk_A_201njk   A3342DGLENSDSFQHHHHS-HHHHaaaaapaaaa
1nq7_A_2551nq7   A275284EFAKRITGFMHHHHT-HHHHaaaaaxaaaa
1nrl_A_2401nrl   A256265SFAKVISYFRHHHHH-HHHHaaaaaxaaaa
1oac_A_1891oac   A197206NIINNSEEFAHHHHT-HHHHaaaaabaaaa
1ogl_A_1901ogl   A201210NQIRQLKGYKHHHHHSHHHHaaaaaxaaaa
1omw_A_551omw   A5665EKIFSQKLGYHHHHTSHHHHaaaaabaaaa
1or7_C_171or7   C2130NELAHNPEMQHHHHT-HHHHaaaaabaaaa
1p1j_A_3551p1j   A357366GYNLSAPKQFHHHHTSHHHHaaaaaxaaaa
1p3w_A_3631p3w   A379388RLRDLSPLWEHHHHS-HHHHaaaaabaaaa
1q16_A_1311q16   A136145ASIIEDADKAHHHHT-HHHHaaaaabaaaa
1q16_A_5421q16   A542551AGLNHWYHLDHHHHTSTTHHaaaaaxaaaa
1qgr_A_8321qgr   A835844KLVEARPMIHHHHHTSHHHHaaaaabaaaa
1qop_B_221qop   B3342VSAQKDPEFQHHHHT-HHHHaaaaaxaaaa
1r7a_A_4081r7a   A412421DENLKRPVVKHHHTTSHHHHaaaaaxaaaa
1rjd_A_1301rjd   A138147SILRESEILRHHHHHSHHHHaaaaaxaaaa
1s32_C_8801s32   C885894LAVRNDEELNHHHHTSHHHHaaaaabaaaa
1up8_A_1831up8   A191200DQLNGLEWFNHHHHTSHHHHaaaaabaaaa
1uvq_B_551uvq   B5968EYWNSQKEVLHHHHT-HHHHaaaaaxaaaa
1v54_A_3361v54   A355364GIVLANSSLDHHHHH-HHHHaaaaaxaaaa
1vjg_A_1851vjg   A193202RIVENWDAWLHHHHT-HHHHaaaaaxaaaa
2cb5_A_82cb5   A1625QKLNSDPQFVHHHHT-HHHHaaaaaxaaaa
2fok_A_1462fok   A154163EAISSYPPAIHHHHT-HHHHaaaaabaaaa
3gcb_*_73gcb   -1524KEFQSDLTHQHHHHTSHHHHaaaaaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dmt_A_7141dmt   A     ZNZINC ION R - 717
1dmt_A_7141dmt   A     RDFN-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN R - 717
1eb6_A_1561eb6   A     ZNZINC ION A - 163
1eb6_A_1561eb6   A     ZNZINC ION D - 164
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL D - 164
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL A - 167
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL L - 168
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL A - 170
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL N - 171
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL A - 172
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL E - 174
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL L - 175
1eyq_A_711eyq   A     SULSULFATE ANION E - 76
1eyq_A_711eyq   A     SULSULFATE ANION L - 78
1eyq_A_711eyq   A     SULSULFATE ANION R - 82
1fqi_A_3001fqi   A     MSESELENOMETHIONINE F - 300
1fqi_A_3001fqi   A     MSESELENOMETHIONINE I - 304
1fqi_A_3001fqi   A     MSESELENOMETHIONINE K - 308
1fqi_A_3001fqi   A     MSESELENOMETHIONINE S - 312
1fqi_A_3001fqi   A     MSESELENOMETHIONINE F - 313
1fqi_A_3001fqi   A     MSESELENOMETHIONINE L - 317
1gee_A_1971gee   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 200
1hkk_A_1041hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS D - 108
1hkk_A_1041hkk   A     ZNZINC ION D - 108
1hkk_A_1041hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS M - 109
1hkk_A_1041hkk   A     ZNZINC ION M - 109
1hkk_A_1041hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS N - 115
1hkk_A_1041hkk   A     ZNZINC ION N - 115
1hwx_A_2111hwx   A     GLUGLUTAMIC ACID R - 211
1hwx_A_2111hwx   A     GTPGUANOSINE-5'-TRIPHOSPHATE R - 211
1hwx_A_2111hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE R - 211
1hwx_A_2111hwx   A     GTPGUANOSINE-5'-TRIPHOSPHATE I - 212
1hwx_A_2111hwx   A     GTPGUANOSINE-5'-TRIPHOSPHATE S - 213
1hwx_A_2111hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE T - 215
1hwx_A_2111hwx   A     GTPGUANOSINE-5'-TRIPHOSPHATE R - 217
1jog_A_81jog   A     MSESELENOMETHIONINE L - 8
1jog_A_81jog   A     MSESELENOMETHIONINE V - 10
1jog_A_81jog   A     MSESELENOMETHIONINE L - 11
1jog_A_81jog   A     MSESELENOMETHIONINE R - 28
1jog_A_81jog   A     MSESELENOMETHIONINE N - 29
1jog_A_81jog   A     MSESELENOMETHIONINE W - 30
1jog_A_81jog   A     MSESELENOMETHIONINE F - 31
1l5x_A_1321l5x   A     MSESELENOMETHIONINE W - 132
1l5x_A_1321l5x   A     GOLGLYCEROL E - 134
1l5x_A_1321l5x   A     MSESELENOMETHIONINE L - 135
1l5x_A_1321l5x   A     GOLGLYCEROL L - 135
1l5x_A_1321l5x   A     GOLGLYCEROL N - 138
1l5x_A_1321l5x   A     MSESELENOMETHIONINE E - 140
1l5x_A_1321l5x   A     MSESELENOMETHIONINE A - 141
1l5x_A_1321l5x   A     GOLGLYCEROL A - 141
1l5x_A_1321l5x   A     MSESELENOMETHIONINE V - 142
1l5x_A_1321l5x   A     MSESELENOMETHIONINE E - 143
1n8v_A_131n8v   A     BDDBROMO-DODECANOL L - 13
1n8v_A_131n8v   A     BDDBROMO-DODECANOL I - 16
1n8v_A_131n8v   A     BDDBROMO-DODECANOL L - 17
1n8v_A_131n8v   A     BDDBROMO-DODECANOL L - 23
1n8v_A_131n8v   A     BDDBROMO-DODECANOL Y - 26
1n8v_A_131n8v   A     BDDBROMO-DODECANOL V - 27
1n8v_A_131n8v   A     BDDBROMO-DODECANOL V - 30
1nbf_A_2231nbf   A     GLZAMINO-ACETALDEHYDE C - 223
1nbf_A_2231nbf   A     GLZAMINO-ACETALDEHYDE Y - 224
1ngk_A_121ngk   A     CNCYANIDE GROUP F - 22
1ngk_A_121ngk   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 23
1ngk_A_121ngk   A     CNCYANIDE GROUP Y - 23
1ngk_A_121ngk   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 32
1ngk_A_121ngk   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 35
1njk_A_201njk   A     MSESELENOMETHIONINE A - 30
1njk_A_201njk   A     MSESELENOMETHIONINE R - 31
1njk_A_201njk   A     MSESELENOMETHIONINE W - 32
1njk_A_201njk   A     IODIODIDE ION W - 32
1njk_A_201njk   A     MSESELENOMETHIONINE D - 33
1njk_A_201njk   A     MSESELENOMETHIONINE G - 34
1njk_A_201njk   A     MSESELENOMETHIONINE L - 35
1njk_A_201njk   A     IODIODIDE ION E - 36
1njk_A_201njk   A     MSESELENOMETHIONINE S - 38
1njk_A_201njk   A     MSESELENOMETHIONINE S - 40
1njk_A_201njk   A     MSESELENOMETHIONINE F - 41
1njk_A_201njk   A     MSESELENOMETHIONINE Q - 42
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID C - 262
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID Q - 265
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID I - 266
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID A - 269
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID Y - 272
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER L - 240
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER H - 242
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER M - 243
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER A - 244
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER D - 245
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER M - 246
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER S - 247
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER F - 251
1p1j_A_3551p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE N - 355
1p1j_A_3551p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE D - 356
1p1j_A_3551p1j   A     CRYPROPANE-1,2,3-TRIOL D - 356
1p1j_A_3551p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE N - 359
1p1j_A_3551p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE L - 360
1p1j_A_3551p1j   A     CRYPROPANE-1,2,3-TRIOL L - 360
1p1j_A_3551p1j   A     PO4PHOSPHATE ION K - 369
1p1j_A_3551p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE K - 369
1p1j_A_3551p1j   A     CRYPROPANE-1,2,3-TRIOL K - 369
1p1j_A_3551p1j   A     PO4PHOSPHATE ION K - 373
1p1j_A_3551p1j   A     CRYPROPANE-1,2,3-TRIOL K - 373
1rjd_A_1301rjd   A     SAMS-ADENOSYLMETHIONINE S - 132
1uvq_B_551uvq   B     ZNZINC ION D - 76
1uvq_B_551uvq   B     ZNZINC ION T - 77
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL M - 339
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL W - 340
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL L - 342
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL G - 343
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL F - 344
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL F - 346
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL L - 347
1v54_A_3361v54   A     HEAHEME-A F - 348
1v54_A_3361v54   A     HEAHEME-A T - 349
1v54_A_3361v54   A     HEAHEME-A V - 350
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL V - 350
1v54_A_3361v54   A     HEAHEME-A G - 351
1v54_A_3361v54   A     HEAHEME-A G - 352
1v54_A_3361v54   A     HEAHEME-A L - 353
1v54_A_3361v54   A     HEAHEME-A T - 354
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL T - 354
1v54_A_3361v54   A     HEAHEME-A G - 355
1v54_A_3361v54   A     HEAHEME-A I - 356
1v54_A_3361v54   A     HEAHEME-A L - 358
1v54_A_3361v54   A     HEAHEME-A A - 359
1v54_A_3361v54   A     HEAHEME-A N - 360
1v54_A_3361v54   A     HEAHEME-A D - 364
1v54_A_3361v54   A     HEAHEME-A L - 367
1vjg_A_1851vjg   A     MSESELENOMETHIONINE W - 198
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hkk_A_1041hkk   A AC8ZN2 BINDING SITE FOR CHAIN AD - 108
1hkk_A_1041hkk   A AC8ZN2 BINDING SITE FOR CHAIN AN - 115
1uvq_B_551uvq   B AC1ZN BINDING SITE FOR CHAIN BD - 76

Clusters included in this Subclass
CLUSTER: HH.0.49
CLUSTER: HH.1.10
CLUSTER: HH.2.19
CLUSTER: HH.3.5
CLUSTER: HH.5.169