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Information on SUBCLASS 1.1.4
Subclass Accession number: 2028
Subclass: 1.1.4 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 37

Average sequence ID (%) : 10.4 +/- 12.8
Average RMSD (Å) : 0.584 +/- 0.166

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XppXX
(φψ)-conformation: aapaa
Pattern: x[adegknqrst]xxx[aeknqrst][cdknqrsty][adegpqst]x[afgilmvy]x
Conservation:-1.329-0.388-0.5560.240-0.8341.9760.1751.6010.024-0.224-0.686
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8p_*_1201a8p   -122132FMSLIQDPEVYHHHHTT-HHHHaaaaaaxaaaa
1chk_A_941chk   A101111WATAAKDTVFQHHHHTTSHHHHaaaaaaxaaaa
1cke_A_941cke   A100110ASQVAAFPRVRHHHHTT-HHHHaaaaaaxaaaa
1e6b_A_1901e6b   A196206YESYNELPAFQHHHHTT-HHHHaaaaaaxaaaa
1ekj_A_2661ekj   A282292LGNLLTYPFVRHHHHTTSHHHHaaaaaaxaaaa
1eo9_A_1491eo9   A149159AEANAKDPVLNHHHHTT-HHHHaaaaaaxaaaa
1ey3_A_2521ey3   A263273FYSTFATDDRRHHHGGGSHHHHaaaaaabaaaa
1ezv_B_1161ezv   B131141YAVAEQCPVKSHHHHTT-HHHHaaaaaabaaaa
1f2e_A_1761f2e   A182192AGKIAQRPAVGHHHHTTSHHHHaaaaaaxaaaa
1g12_A_1461g12   A146156PDKAVMNADNHHHHHTTBHHHHaaaaaabaaaa
1g2i_A_721g2i   A7383PERVRLNEKAVHHHHTT-HHHHaaaaaaxaaaa
1goi_A_1071goi   A110120YVNAVKTPASRHHHHTSSHHHHaaaaaabaaaa
1gzq_A_1381gzq   A145155CALIIQYQGIMHHHHTT-HHHHaaaaaaxaaaa
1h3g_A_4921h3g   A505515ANWRKNQPVIHHHHHTT-HHHHaaaaaabaaaa
1hdm_B_481hdm   B5464SQHLNQKDTLMHHHHHT-HHHHaaaaaaxaaaa
1hlb_*_611hlb   -6171ASQLRSSRQMQHHHHTT-HHHHaaaaaabaaaa
1hr6_B_1371hr6   B151161SEEVDKMYDEVHHHHTT-HHHHaaaaaabaaaa
1hw1_A_1591hw1   A176186GRHYFANPEARHHHHTTSHHHHaaaaaaxaaaa
1ieg_A_911ieg   A98108RRASEKSELVSHHHHTT-HHHHaaaaaabaaaa
1iqc_A_1071iqc   A111121EKVVASMPQYRHHHHHT-HHHHaaaaaaxaaaa
1j7n_A_2511j7n   A257267EELKDQRMLSRHHHHTT-HHHHaaaaaaxaaaa
1jj2_C_1041jj2   C114124ALAATADADLVHHHHTT-HHHHaaaaaabaaaa
1k6k_A_271k6k   A3141LLALLSNPSARHHHHTT-HHHHaaaaaaxaaaa
1k8k_A_3761k8k   A381391GSMLASTPEFYHHHHTTSHHHHaaaaaabaaaa
1l0l_A_1241l0l   A138148LQENDTSMRDVHHHHTT-HHHHaaaaaaxaaaa
1l0l_B_3541l0l   B368378YLMSVESSEGFHHHHTSSHHHHaaaaaaxaaaa
1l5x_A_1001l5x   A100110LQVILSSGTLGHHHHTT-HHHHaaaaaaxaaaa
1l5x_A_1321l5x   A132142WNELLNNKEAVHHHHHT-HHHHaaaaaabaaaa
1o9g_A_871o9g   A95105KNLALLSPAGLHHHHTTSHHHHaaaaaabaaaa
1oj6_A_521oj6   A5262PEDSLSSPEFLHHHHTT-HHHHaaaaaaxaaaa
1onr_A_2781onr   A282292LWQHNQDPMAVHHHHHT-HHHHaaaaaabaaaa
1oyj_A_1921oyj   A198208ARRCGRIDSVVHHHHTTSHHHHaaaaaaxaaaa
1q5n_A_4031q5n   A404414KDIISQVDEVKHHHHTT-HHHHaaaaaaxaaaa
1r7a_A_4081r7a   A411421IDENLKRPVVKHHHHTTSHHHHaaaaaaxaaaa
1rkp_A_7061rkp   A718728QAILATDLALYHHHHHT-HHHHaaaaaaxaaaa
1rxx_A_741rxx   A7686LTETIQNPEALHHHHTTSHHHHaaaaaaxaaaa
1v54_A_3361v54   A354364TGIVLANSSLDHHHHHH-HHHHaaaaaaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8p_*_1201a8p   *     FADFLAVIN-ADENINE DINUCLEOTIDE A - 120
1a8p_*_1201a8p   *     FADFLAVIN-ADENINE DINUCLEOTIDE P - 121
1ekj_A_2661ekj   A     EGLETHYLENE GLYCOL A - 280
1ekj_A_2661ekj   A     EGLETHYLENE GLYCOL N - 284
1ey3_A_2521ey3   A     DAK4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA K - 260
1ey3_A_2521ey3   A     DAK4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA F - 263
1ey3_A_2521ey3   A     DAK4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA Y - 264
1ey3_A_2521ey3   A     DAK4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA F - 279
1g12_A_1461g12   A     ZNZINC ION A - 153
1g12_A_1461g12   A     ZNZINC ION D - 154
1g2i_A_721g2i   A     MSESELENOMETHIONINE S - 84
1g2i_A_721g2i   A     MSESELENOMETHIONINE I - 85
1g2i_A_721g2i   A     MSESELENOMETHIONINE A - 86
1g2i_A_721g2i   A     MSESELENOMETHIONINE R - 87
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE F - 144
1gzq_A_1381gzq   A     D12DODECANE F - 144
1gzq_A_1381gzq   A     TWTDOCOSANE F - 144
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE C - 145
1gzq_A_1381gzq   A     D12DODECANE L - 147
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE I - 148
1gzq_A_1381gzq   A     D12DODECANE I - 148
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE I - 149
1gzq_A_1381gzq   A     D12DODECANE Y - 151
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE G - 153
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE I - 154
1gzq_A_1381gzq   A     D12DODECANE I - 154
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE M - 155
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE E - 156
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE T - 157
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE V - 158
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE R - 159
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE I - 160
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE L - 161
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE L - 162
1gzq_A_1381gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE Y - 163
1h3g_A_4921h3g   A     MSESELENOMETHIONINE Q - 494
1h3g_A_4921h3g   A     CACALCIUM ION Q - 494
1h3g_A_4921h3g   A     MSESELENOMETHIONINE V - 501
1h3g_A_4921h3g   A     MSESELENOMETHIONINE L - 504
1h3g_A_4921h3g   A     MSESELENOMETHIONINE A - 505
1h3g_A_4921h3g   A     MSESELENOMETHIONINE W - 507
1h3g_A_4921h3g   A     MSESELENOMETHIONINE R - 508
1h3g_A_4921h3g   A     CACALCIUM ION R - 508
1h3g_A_4921h3g   A     MSESELENOMETHIONINE I - 514
1h3g_A_4921h3g   A     CACALCIUM ION I - 514
1hlb_*_611hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 69
1hlb_*_611hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 73
1hlb_*_611hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 76
1hlb_*_611hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 77
1hlb_*_611hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 80
1hlb_*_611hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 81
1hr6_B_1371hr6   B     ZNZINC ION I - 147
1hr6_B_1371hr6   B     ZNZINC ION E - 150
1l5x_A_1001l5x   A     GOLGLYCEROL A - 116
1l5x_A_1001l5x   A     GOLGLYCEROL L - 117
1l5x_A_1321l5x   A     MSESELENOMETHIONINE W - 132
1l5x_A_1321l5x   A     GOLGLYCEROL E - 134
1l5x_A_1321l5x   A     MSESELENOMETHIONINE L - 135
1l5x_A_1321l5x   A     GOLGLYCEROL L - 135
1l5x_A_1321l5x   A     GOLGLYCEROL N - 138
1l5x_A_1321l5x   A     MSESELENOMETHIONINE E - 140
1l5x_A_1321l5x   A     MSESELENOMETHIONINE A - 141
1l5x_A_1321l5x   A     GOLGLYCEROL A - 141
1l5x_A_1321l5x   A     MSESELENOMETHIONINE V - 142
1l5x_A_1321l5x   A     MSESELENOMETHIONINE E - 143
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 60
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 63
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 64
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 67
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 68
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 69
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 71
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 72
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 73
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 74
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 77
1oyj_A_1921oyj   A     MGMAGNESIUM ION P - 192
1oyj_A_1921oyj   A     MGMAGNESIUM ION R - 193
1oyj_A_1921oyj   A     GOLGLYCEROL L - 194
1oyj_A_1921oyj   A     GOLGLYCEROL A - 195
1oyj_A_1921oyj   A     GOLGLYCEROL A - 196
1oyj_A_1921oyj   A     GOLGLYCEROL A - 198
1oyj_A_1921oyj   A     GOLGLYCEROL R - 199
1rkp_A_7061rkp   A     ZNZINC ION T - 723
1rkp_A_7061rkp   A     MGMAGNESIUM ION T - 723
1rkp_A_7061rkp   A     MGMAGNESIUM ION D - 724
1rkp_A_7061rkp   A     IBM3-ISOBUTYL-1-METHYLXANTHINE L - 725
1rxx_A_741rxx   A     MSESELENOMETHIONINE N - 74
1rxx_A_741rxx   A     MSESELENOMETHIONINE L - 75
1rxx_A_741rxx   A     MSESELENOMETHIONINE L - 76
1rxx_A_741rxx   A     MSESELENOMETHIONINE T - 77
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL M - 339
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL W - 340
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL L - 342
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL G - 343
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL F - 344
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL F - 346
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL L - 347
1v54_A_3361v54   A     HEAHEME-A F - 348
1v54_A_3361v54   A     HEAHEME-A T - 349
1v54_A_3361v54   A     HEAHEME-A V - 350
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL V - 350
1v54_A_3361v54   A     HEAHEME-A G - 351
1v54_A_3361v54   A     HEAHEME-A G - 352
1v54_A_3361v54   A     HEAHEME-A L - 353
1v54_A_3361v54   A     HEAHEME-A T - 354
1v54_A_3361v54   A     TGLTRISTEAROYLGLYCEROL T - 354
1v54_A_3361v54   A     HEAHEME-A G - 355
1v54_A_3361v54   A     HEAHEME-A I - 356
1v54_A_3361v54   A     HEAHEME-A L - 358
1v54_A_3361v54   A     HEAHEME-A A - 359
1v54_A_3361v54   A     HEAHEME-A N - 360
1v54_A_3361v54   A     HEAHEME-A D - 364
1v54_A_3361v54   A     HEAHEME-A L - 367
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gzq_A_1381gzq   A AC5D12 BINDING SITE FOR CHAIN AF - 144
1gzq_A_1381gzq   A AC5D12 BINDING SITE FOR CHAIN AY - 151
1gzq_A_1381gzq   A AC4NO3 BINDING SITE FOR CHAIN AL - 161
1oj6_A_521oj6   A AC1HEM BINDING SITE FOR CHAIN AH - 64
1oj6_A_521oj6   A AC1HEM BINDING SITE FOR CHAIN AK - 67
1oj6_A_521oj6   A AC2HEM BINDING SITE FOR CHAIN BT - 77

Clusters included in this Subclass
CLUSTER: HH.2.20
CLUSTER: HH.3.20
CLUSTER: HH.4.10
CLUSTER: HH.4.96