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Information on SUBCLASS 1.1.6
Subclass Accession number: 2030
Subclass: 1.1.6 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 26

Average sequence ID (%) : 11.6 +/- 13.5
Average RMSD (Å) : 0.527 +/- 0.203

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXpXX
(φψ)-conformation: aapaa
Pattern: xxx[afilv]xx[cdehnqrst][dekpqrs]xxxx
Conservation:-1.069-0.627-0.5422.5020.3680.4840.0780.6360.490-0.862-0.521-0.937
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b8a_A_1241b8a   A124135RFMDLRRPEVMAHHHHTTSHHHHHaaaaaaxaaaaa
1bgx_T_4021bgx   T417428WGRLEGEERLLWHHHHTT-HHHHHaaaaaabaaaaa
1ehy_A_1511ehy   A152163YSQFHQLDMAVEHHHHTT-HHHHHaaaaaaxaaaaa
1g2i_A_721g2i   A7384PERVRLNEKAVSHHHHTT-HHHHHaaaaaaxaaaaa
1hbn_B_4131hbn   B416426KEVFSQVDEFR.HHHHTTSHHHH.aaaaaaxaaaa.
1iz0_A_2441iz0   A244255LTPLLREGALVEHHHHTT-HHHHHaaaaaaxaaaaa
1j9m_A_1541j9m   A161172ASSAMKNSTFRTHHHHTTSHHHHHaaaaaaxaaaaa
1jdh_A_2081jdh   A218229LHNLSHHREGLLHHHHTTSHHHHHaaaaaabaaaaa
1jdh_A_3341jdh   A344355LKVLSVCSSNKPHHHHTTSTTHHHaaaaaaxaaaaa
1jdh_A_5041jdh   A514525IRNLALCPANHAHHHHTTSGGGHHaaaaaaxaaaaa
1jdh_A_5661jdh   A577588LHILARDVHNRIHHHHTTSHHHHHaaaaaaxaaaaa
1jdh_A_6081jdh   A618629LCELAQDKEAAEHHHHTTSHHHHHaaaaaabaaaaa
1l0w_A_1311l0w   A131142RYLDLRRRRMQEHHHHTTSHHHHHaaaaaaxaaaaa
1m8z_A_10331m8z   A10331044TEQLVQDQYGNYHHHHTTSTTHHHaaaaaaxaaaaa
1m8z_A_10691m8z   A10691080VLVLSQHKFASNHHHHHTSTTHHHaaaaaaxaaaaa
1m8z_A_9971m8z   A9971008VFALSTHPYGCRHHHHHTSTTHHHaaaaaabaaaaa
1mdw_A_1051mdw   A111122IASLTLNEEILAHHHHTT-HHHHHaaaaaabaaaaa
1nm8_A_2351nm8   A242253YNTLIKDKVNRDHHHHTTSHHHHHaaaaaaxaaaaa
1nrl_A_3151nrl   A315326FQQLLLEPMLKFHHHHTTSHHHHHaaaaaaxaaaaa
1oj6_A_521oj6   A5263PEDSLSSPEFLDHHHHTT-HHHHHaaaaaaxaaaaa
1pb7_A_1801pb7   A182193DIYFRRQVELSTHHHHHT-GGGHHaaaaaabaaaaa
1poi_A_2591poi   A265276YDKVSKTQEDFDHHHHTTSHHHHHaaaaaabaaaaa
1r5l_A_1291r5l   A140151SELIVQEVETQRHHHHTTSHHHHHaaaaaaxaaaaa
1s29_A_471s29   A4757LETLLTFKRVN.HHHHTTSHHHH.aaaaaaxaaaa.
1uuz_A_61uuz   A617LFELLGQPGYKAHHHHTTSHHHHHaaaaaaxaaaaa
3mbp_*_3053mbp   -308319EEELAKDPRIAAHHHHTTSHHHHHaaaaaaxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g2i_A_721g2i   A     MSESELENOMETHIONINE S - 84
1g2i_A_721g2i   A     MSESELENOMETHIONINE I - 85
1g2i_A_721g2i   A     MSESELENOMETHIONINE A - 86
1g2i_A_721g2i   A     MSESELENOMETHIONINE R - 87
1hbn_B_4131hbn   B     MGMAGNESIUM ION Q - 421
1hbn_B_4131hbn   B     MGMAGNESIUM ION D - 423
1iz0_A_2441iz0   A     MSESELENOMETHIONINE F - 260
1nrl_A_3151nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER M - 323
1nrl_A_3151nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER L - 324
1nrl_A_3151nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER H - 327
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 60
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 63
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 64
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 67
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 68
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 69
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 71
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 72
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 73
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 74
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 77
1pb7_A_1801pb7   A     GLYGLYCINE S - 180
1pb7_A_1801pb7   A     GLYGLYCINE V - 181
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL A - 129
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL Y - 130
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL V - 132
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL F - 133
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL S - 136
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL L - 137
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL S - 140
1s29_A_471s29   A     MSESELENOMETHIONINE L - 47
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oj6_A_521oj6   A AC1HEM BINDING SITE FOR CHAIN AH - 64
1oj6_A_521oj6   A AC1HEM BINDING SITE FOR CHAIN AK - 67
1oj6_A_521oj6   A AC2HEM BINDING SITE FOR CHAIN BT - 77

Clusters included in this Subclass
CLUSTER: HH.2.21
CLUSTER: HH.3.12
CLUSTER: HH.4.8
CLUSTER: HH.5.86