ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.1.13

Subclass Accession number: 2037
Subclass: 1.1.13

PSSM

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
EC : 3.2 (>75 %)  3.2.1 (>75 %)  3.2.1.17
GO : GO:0003796 (>75 %)  GO:0004553 (>75 %)  GO:0016798 (>75 %)
SCOP : 53954 (>75 %)  53955 (>75 %)  53981 (>75 %)

Number of loops: 13

Average sequence ID (%) : 6.9 +/- 9.8
Average RMSD (Å) : 0.577 +/- 0.136

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 0-45

rho (°): 180-225

Consensus Sequence:	XXpXX
(φψ)-conformation:	aapaa

Pattern:	x	[cdekrsty]	x	x	x	[cdnrs]	x	x	x	x	x
Conservation:	-0.624	-0.160	0.976	-0.196	-0.191	2.643	-0.913	-0.420	-0.065	-0.573	-0.478

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a26_*_667	1a26	-	673	683	IKMIFDVESMK	HHHHT-HHHHH	aaaaaxaaaaa
1bed_*_117	1bed	-	121	131	DAAYNGFAVDS	HHHHTSHHHHH	aaaaaxaaaaa
1di1_A_193	1di1	A	198	208	EYREKDVGKAL	HHHHT-HHHHH	aaaaapaaaaa
1elj_A_314	1elj	A	314	324	PEIKNDPVIYG	HHHHT-HHHHH	aaaaaxaaaaa
1emu_A_234	1emu	A	236	246	PSFLKSDIYLE	HHHHTSHHHHH	aaaaaxaaaaa
1i1i_P_93	1i1i	P	111	121	IEMSMREDVFQ	HHHHT-HHHHH	aaaaaxaaaaa
1n81_A_146	1n81	A	150	160	KRIMNDKKLIR	HHHHT-HHHHH	aaaaaxaaaaa
1p80_A_673	1p80	A	673	683	ADIADNGDANY	HHHHT-HHHHH	aaaaaxaaaaa
1q5n_A_12	1q5n	A	14	24	VTEIFSDRALV	HHHHTSHHHHH	aaaaaxaaaaa
1qla_B_156	1qla	B	156	166	CCIAACGTKIM	HHHHT-HHHHH	aaaaaxaaaaa
1s14_A_1086	1s14	A	1089	1099	LILCISVVNAL	HHHHTSHHHHH	aaaaaxaaaaa
1ufa_A_61	1ufa	A	64	74	AEQLADARIKE	HHHHT-HHHHH	aaaaaxaaaaa
1urs_A_335	1urs	A	335	345	SAVQSSPTFKA	HHHHT-HHHHH	aaaaaxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1qla_B_156	1qla	B	FS4IRON/SULFUR CLUSTER	C - 156
1qla_B_156	1qla	B	F3SFE3-S4 CLUSTER	C - 157
1qla_B_156	1qla	B	FS4IRON/SULFUR CLUSTER	C - 157
1qla_B_156	1qla	B	FS4IRON/SULFUR CLUSTER	I - 158
1qla_B_156	1qla	B	F3SFE3-S4 CLUSTER	A - 160
1qla_B_156	1qla	B	F3SFE3-S4 CLUSTER	C - 161
1qla_B_156	1qla	B	F3SFE3-S4 CLUSTER	G - 162
1qla_B_156	1qla	B	F3SFE3-S4 CLUSTER	T - 163
1qla_B_156	1qla	B	F3SFE3-S4 CLUSTER	K - 164
1s14_A_1086	1s14	A	NOVNOVOBIOCIN	A - 1086
1s14_A_1086	1s14	A	NOVNOVOBIOCIN	I - 1090
1ufa_A_61	1ufa	A	MSESELENOMETHIONINE	L - 67
1ufa_A_61	1ufa	A	MSESELENOMETHIONINE	R - 71
1ufa_A_61	1ufa	A	MSESELENOMETHIONINE	I - 72
1ufa_A_61	1ufa	A	MSESELENOMETHIONINE	G - 75
1ufa_A_61	1ufa	A	MSESELENOMETHIONINE	F - 76
1ufa_A_61	1ufa	A	MSESELENOMETHIONINE	Y - 79

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1qla_B_156	1qla	B	FS1FE4S4 IRON SULPHUR CENTRE LIGANDS FOR CHAIN B	C - 157
1qla_B_156	1qla	B	FS5FE3S4 IRON SULPHUR CENTRE LIGANDS FOR CHAIN B	C - 161

Clusters included in this Subclass

CLUSTER: HH.1.35

CLUSTER: HH.3.30