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Information on SUBCLASS 1.2.20
Subclass Accession number: 2098
Subclass: 1.2.20 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005344 (>75 %)  
SCOP : 46457 (>75 %)  46458 (>75 %)  46463 (>75 %)  
 Number of loops: 5

Average sequence ID (%) : 13.0 +/- 12.1
Average RMSD (Å) : 0.420 +/- 0.110

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XcDXc
(φψ)-conformation: aabaa
Pattern: [aglm][apy][al][AILV][adgq][adkn][AFILY]x[ders][HNQ]x[DEGK][DN][ENP][DGKN][adks][LMV][KLMV]xx
Conservation:-0.744-0.682-0.3680.402-0.976-0.943-0.280-0.303-0.9101.983-0.5250.1802.6840.8160.276-0.8431.1980.010-0.356-0.621
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cqx_A_501cqx   A5877ARAVYAYAENIEDPNSLMAVHHHHHHHHHHTT-HHHHHHHaaaaaaaaaaaabaaaaaaa
1jl7_A_531jl7   A6382LAQIGVAVSHLGDEGKMVAEHHHHHHHHHTTTSHHHHHHHaaaaaaaaaaaabaaaaaaa
1mwm_A_2191mwm   A219238SYLADDIIIHRKDNNYLKQRHHHHHHHHHTTT-HHHHHHHaaaaaaaaaaaabaaaaaaa
1v93_A_2301v93   A230249GPLLAKLERHQDDPKAVLEIHHHHHHHHHTTT-HHHHHHHaaaaaaaaaaaabaaaaaaa
3sdh_A_643sdh   A7493MYALQNFIDQLDNPDDLVCVHHHHHHHHHTTT-HHHHHHHaaaaaaaaaaaabaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL A - 56
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 57
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL R - 59
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 60
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL A - 60
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL V - 61
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL A - 63
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL Y - 64
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 74
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL V - 77
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 78
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 78
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 80
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 81
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL I - 81
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 84
1cqx_A_501cqx   A     FADFLAVIN-ADENINE DINUCLEOTIDE K - 84
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 85
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 88
1jl7_A_531jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 58
1jl7_A_531jl7   A     CNCYANIDE GROUP L - 58
1jl7_A_531jl7   A     CNCYANIDE GROUP G - 59
1jl7_A_531jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 61
1jl7_A_531jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 62
1jl7_A_531jl7   A     CNCYANIDE GROUP V - 62
1jl7_A_531jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 63
1jl7_A_531jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 65
1jl7_A_531jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 66
1jl7_A_531jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 83
1jl7_A_531jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 86
1jl7_A_531jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 89
1mwm_A_2191mwm   A     ADPADENOSINE-5'-DIPHOSPHATE S - 219
1mwm_A_2191mwm   A     ADPADENOSINE-5'-DIPHOSPHATE D - 223
1mwm_A_2191mwm   A     ADPADENOSINE-5'-DIPHOSPHATE I - 226
1mwm_A_2191mwm   A     ADPADENOSINE-5'-DIPHOSPHATE I - 227
1mwm_A_2191mwm   A     ADPADENOSINE-5'-DIPHOSPHATE R - 229
1v93_A_2301v93   A     DOXDIOXANE K - 235
1v93_A_2301v93   A     DOXDIOXANE H - 239
1v93_A_2301v93   A     DOXDIOXANE D - 242
1v93_A_2301v93   A     DOXDIOXANE K - 244
1v93_A_2301v93   A     DOXDIOXANE A - 245
1v93_A_2301v93   A     DOXDIOXANE V - 246
1v93_A_2301v93   A     DOXDIOXANE E - 248
1v93_A_2301v93   A     DOXDIOXANE I - 249
1v93_A_2301v93   A     DOXDIOXANE V - 258
1v93_A_2301v93   A     DOXDIOXANE L - 262
1v93_A_2301v93   A     DOXDIOXANE E - 263
3sdh_A_643sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 69
3sdh_A_643sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 72
3sdh_A_643sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 73
3sdh_A_643sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 76
3sdh_A_643sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 77
3sdh_A_643sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 80
3sdh_A_643sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 96
3sdh_A_643sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 97
3sdh_A_643sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 100
3sdh_A_643sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 101

Clusters included in this Subclass
CLUSTER: HH.3.140