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PDB code:

Information on SUBCLASS 3.4.1

Subclass Accession number: 210 Subclass: 3.4.1 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 27 Average sequence ID (%) : 10.0 +/- 12.0 Average RMSD (Å) : 0.804 +/- 0.214 Consensus geometry d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aiu_*_33	1aiu	-	43	54	HSLSEKYSNVIF	HHHHHH-TTEEE	aaaaaabaabbb
1amf_*_171	1amf	-	171	182	GSDAVASKGVKV	HHHHHH-SSEEE	aaaaaaxaabbx
1b7g_O_11	1b7g	O	17	28	ADAIIKQPDMKL	HHHHHT-TTEEE	aaaaaaxaabbx
1bob_*_231	1bob	-	240	251	IQSWLEDKSITE	HHHHHH-TTEEE	aaaaaaxaaxab
1c7k_A_15	1c7k	A	23	34	QIWNSSVRNVQL	HHHHHH-SSEEE	aaaaaabaabbb
1chu_A_145	1chu	A	145	156	VSKALNHPNIRV	HHHHHH-TTEEE	aaaaaaxaabbb
1cqx_A_309	1cqx	A	315	326	REAAKTYENLDL	HHHHHH-TTEEE	aaaaaaxaabbb
1dhn_*_73	1dhn	-	82	93	NRINSQYNRVME	HHHHHH-TTEEE	aaaaaabaaxab
1elu_A_298	1elu	A	313	324	WRGLNQLPHVHC	HHHHHHSTTEEE	aaaaaaxaabbx
1feh_A_211	1feh	A	214	225	VKNALNAPEKHV	HHHHHH-TT-EE	aaaaaaxaaxxx
1fo8_A_220	1fo8	A	228	239	YPLLKADPSLWC	HHHHHH-TTEEE	aaaaaabaabab
1gud_A_146	1gud	A	156	167	TEAFKKASQIKL	HHHHHT-TTEEE	aaaaaabaaxbx
1hyu_A_132	1hyu	A	140	151	NLMAVLNPRIKH	HHHHHH-TTEEE	aaaaaabaabbb
1iu8_A_18	1iu8	A	24	35	EALSERIPEVVG	HHHHHH-TTEEE	aaaaaabaaxbb
1j1i_A_238	1j1i	A	242	253	YKFLDLIDDSWG	HHHHHH-TTEEE	aaaaaaxaabbb
1jlr_A_22	1jlr	A	27	38	QDIITRFPNVVL	HHHHHH-TTEEE	aaaaaabaaxbx
1jz7_A_549	1jz7	A	553	564	WQAFRQYPRLQG	HHHHHH-TTEEE	aaaaaabaaxae
1lam_*_180	1lam	-	189	200	ENLKSASIKTDV	HHHHHH-SSEEE	aaaaaabaabbb
1mg7_A_280	1mg7	A	290	301	EKLMNEHEQVEG	HHHHHH-TTEEE	aaaaaabaaxab
1ovn_A_57	1ovn	A	67	78	KSAHKATKDLLI	HHHHHH-SSEEE	aaaaaabaabxb
1pb7_A_225	1pb7	A	229	240	EFEASQKCDLVT	HHHHHH-TTEEE	aaaaaabaabbb
1q0r_A_255	1q0r	A	257	268	KHLAGLIPTARL	HHHHHTSTTEEE	aaaaaabaaxbb
1r51_A_227	1r51	A	236	247	EQILARQQLIET	HHHHHH-TTEEE	aaaaaabaaxab
1r51_A_76	1r51	A	85	96	THFIEKYNHIHA	HHHHHH-TTEEE	aaaaaabaaxab
1rjd_A_112	1rjd	A	113	124	LPLLQMFPHLAY	HHHHHH-TTEEE	aaaaaabaaxbb
1s1q_A_18	1s1q	A	26	37	VNVITLYKDLKP	HHHHHH-TTEEE	aaaaaabaabbx
2dkb_*_326	2dkb	-	342	353	LDLMERFDCIGD	HHHHHH-TTEEE	aaaaaabaaxab

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bob_*_231	1bob	*	ACOACETYL COENZYME *A	H - 231
1bob_*_231	1bob	*	ACOACETYL COENZYME *A	G - 232
1bob_*_231	1bob	*	ACOACETYL COENZYME *A	S - 233
1bob_*_231	1bob	*	ACOACETYL COENZYME *A	V - 254
1c7k_A_15	1c7k	A	CACALCIUM ION	E - 17
1c7k_A_15	1c7k	A	CACALCIUM ION	N - 20
1feh_A_211	1feh	A	HC12 IRON/2 SULFUR/5 CARBONYL/2 WATER INORGANIC CLUSTER	M - 229
1fo8_A_220	1fo8	A	MMCMETHYL MERCURY ION	F - 220
1gud_A_146	1gud	A	ZNZINC ION	E - 157
1gud_A_146	1gud	A	ZNZINC ION	K - 160
1jz7_A_549	1jz7	A	DMSDIMETHYL SULFOXIDE	W - 553
1jz7_A_549	1jz7	A	DMSDIMETHYL SULFOXIDE	R - 557
1q0r_A_255	1q0r	A	AKT10-DECARBOXYMETHYLACLACINOMYCIN T (DCMAT)	H - 255
1r51_A_76	1r51	A	FCYFREE CYSTEINE	H - 98
1r51_A_76	1r51	A	FCYFREE CYSTEINE	N - 100
1r51_A_227	1r51	A	AZA8-AZAXANTHINE	V - 227
1r51_A_227	1r51	A	AZA8-AZAXANTHINE	Q - 228
1r51_A_227	1r51	A	AZA8-AZAXANTHINE	N - 254
1rjd_A_112	1rjd	A	SAMS-ADENOSYLMETHIONINE	I - 127
1rjd_A_112	1rjd	A	SAMS-ADENOSYLMETHIONINE	D - 128
1s1q_A_18	1s1q	A	MSESELENOMETHIONINE	T - 21
1s1q_A_18	1s1q	A	MSESELENOMETHIONINE	T - 25
1s1q_A_18	1s1q	A	MSESELENOMETHIONINE	K - 36
1s1q_A_18	1s1q	A	MSESELENOMETHIONINE	P - 37

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gud_A_146	1gud	A	ZN2ZN BINDING SITE FOR CHAIN A	E - 157

Clusters included in this Subclass

CLUSTER: HE.2.23

CLUSTER: HE.2.56

CLUSTER: HE.2.90

CLUSTER: HE.3.17

CLUSTER: HE.4.34

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