ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.2.40

Subclass Accession number: 2118
Subclass: 1.2.40

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0000287 (>75 %) GO:0008879 (>75 %) GO:0016301 (>75 %) GO:0016772 (>75 %) GO:0016779 (>75 %)
SCOP : 53447 (>75 %) 53448 (>75 %) 53464 (>75 %)

Number of loops: 2

Average sequence ID (%) : 19.2 +/- 0.0
Average RMSD (Å) : 0.600 +/- 0.000

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	hXpPK
(φψ)-conformation:	aabaa

Pattern:	[S]	[AL]	x	[KV]	[KV]	[AI]	[IK]	[EK]	[K]	x	[AL]	[AE]	[NS]	[P]	[K]	[AQ]	[GM]	x	[AE]	[CE]	[LV]	[ER]	[KS]	[FT]	[LV]	[S]
Conservation:	1.074	-0.550	-1.037	-0.712	-0.712	-0.550	-1.037	0.425	1.724	-0.550	-0.550	-0.387	0.425	3.023	1.724	-0.387	-0.712	-1.199	-0.387	-0.550	0.100	0.100	-0.062	-0.387	0.100	1.074

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f14_A_48	1f14	A	61	86	SLRKVAKKKFAENPKAGDECVEKTLS	HHHHHHHHHSTT-HHHHHHHHHHHHH	aaaaaaaaaaaabaaaaaaaaaaaaa
1qop_A_235	1qop	A	235	260	SAIVKIIEKNLASPKQMLAELRSFVS	HHHHHHHHHTTT-HHHHHHHHHHHHH	aaaaaaaaaaaabaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1qop_A_235	1qop	A	IPLINDOLE-3-PROPANOL PHOSPHATE	S - 235
1qop_A_235	1qop	A	IPLINDOLE-3-PROPANOL PHOSPHATE	A - 236

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1qop_A_235	1qop	A	IPLSUBSTRATE ANALOG BOUND TO THE ALPHA ACTIVE SITE.	S - 235

Clusters included in this Subclass