ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.3.5

Subclass Accession number: 2125
Subclass: 1.3.5

PSSM

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 13.8 +/- 16.0
Average RMSD (Å) : 0.564 +/- 0.196

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	pXcXX
(φψ)-conformation:	aalaa

Pattern:	x	[ailpy]	[ackl]	x	[aeknqs]	x	[dgns]	x	x	[DERS]	x	[AFLV]	x
Conservation:	-0.725	-0.323	0.324	-0.809	0.535	-0.803	1.201	-0.514	-0.533	2.242	-0.657	1.088	-1.025

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aco_*_274	1aco	-	278	290	KYLSKTGRADIAN	HHHHHTT-HHHHH	aaaaaavaaaaaa
1ayx_*_217	1ayx	-	232	244	DIAKSFDDGDFAN	HHHHHTT-HHHHH	aaaaaalaaaaaa
1bm8_*_80	1bm8	-	85	97	QLAEKFSVYDQLK	HHHHHTT-HHHHH	aaaaaalaaaaaa
1cnz_A_299	1cnz	A	308	320	LLRYSLDANDAAT	HHHHHSS-HHHHH	aaaaaalaaaaaa
1cy5_A_65	1cy5	A	73	85	NALLHEGYKDLAA	HHHHHTT-HHHHH	aaaaaagaaaaaa
1eex_A_470	1eex	A	475	487	KALAQGGFTDVAQ	HHHHHTT-HHHHH	aaaaaavaaaaaa
1fch_A_485	1fch	A	493	505	ATLANGNQSEEAV	HHHHHTT-HHHHH	aaaaaavaaaaaa
1i9z_A_749	1i9z	A	753	765	VPCIAQGKLSYLF	HHHHHTT-HHHHH	aaaaaavaaaaaa
1iq8_A_198	1iq8	A	198	210	VPLLESYRFRDVV	HHHHHTT-HHHHH	aaaaaavaaaaaa
1k1e_A_147	1k1e	A	154	166	MILQAQGKSSVFD	HHHHHTT-THHHH	aaaaaavaaaaaa
1qsa_A_102	1qsa	A	110	122	YAKWNTGQSEEAW	HHHHHTT-HHHHH	aaaaaavaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cy5_A_65	1cy5	A	ZNZINC ION	S - 70
1cy5_A_65	1cy5	A	ZNZINC ION	N - 73
1cy5_A_65	1cy5	A	ZNZINC ION	A - 74
1cy5_A_65	1cy5	A	ZNZINC ION	H - 77
1cy5_A_65	1cy5	A	ZNZINC ION	E - 78

Clusters included in this Subclass

CLUSTER: HH.2.115

CLUSTER: HH.3.84

CLUSTER: HH.4.274