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Information on SUBCLASS 1.3.7
Subclass Accession number: 2127
Subclass: 1.3.7 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.7.7 (>75 %)  2.7.7.7
SCOP : 53066 (>75 %)  53098 (>75 %)  53118 (>75 %)  
Number of loops: 7

Average sequence ID (%) : 12.6 +/- 13.4
Average RMSD (Å) : 0.529 +/- 0.229

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pXcXX
(φψ)-conformation: aalaa
Pattern: [adegt][afiklt][afglm][ADEQRT]x[ALV]x[DERS][adn][DGN]xx[EGPS][ade][AFLV]x[dekty]
Conservation:-0.605-0.842-0.9390.219-0.8211.517-0.9051.325-0.2772.533-0.779-0.5590.4320.1390.511-0.717-0.232
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e12_A_1821e12   A182198DWAASASSAGTAEIFDTHHHHHHHHHT-HHHHHHaaaaaaaaavaaaaaaa
1gai_*_1261gai   -137153GFGQWLLDNGYTSAATEHHHHHHHHTT-HHHHHHaaaaaaaaavaaaaaaa
1i36_A_1541i36   A175191ETLTAAHRLGLEEDVLEHHHHHHHHTT-HHHHHHaaaaaaaaavaaaaaaa
1j97_A_211j97   A2137TIDEIAREAGVEEEVKKHHHHHHHHTT-HHHHHHaaaaaaaaavaaaaaaa
1jqn_A_7341jqn   A736752TALQKVVEDGKQSELEAHHHHHHHTTT-HHHHHHaaaaaaaaavaaaaaaa
1mna_A_111mna   A1430ALFRQAVEDDRYGEFLDHHHHHHHHTT-HHHHHHaaaaaaaaavaaaaaaa
1mxg_A_2451mxg   A249265YKMDEAFDNNNIPALVYHHHHHHHTTT-HHHHHHaaaaaaaaalaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e12_A_1821e12   A     RETRETINAL W - 207
1e12_A_1821e12   A     RETRETINAL L - 208
1e12_A_1821e12   A     RETRETINAL Y - 210
1e12_A_1821e12   A     RETRETINAL P - 211
1e12_A_1821e12   A     RETRETINAL W - 214
1gai_*_1261gai   *     MANALPHA-D-MANNOSE E - 153
1i36_A_1541i36   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 159
1j97_A_211j97   A     BFDASPARTATE BERYLLIUM TRIFLUORIDE M - 43
1j97_A_211j97   A     MGMAGNESIUM ION M - 43
1mxg_A_2451mxg   A     MGMAGNESIUM ION D - 252
1mxg_A_2451mxg   A     MGMAGNESIUM ION D - 256
1mxg_A_2451mxg   A     MGMAGNESIUM ION N - 257

Clusters included in this Subclass
CLUSTER: HH.2.120
CLUSTER: HH.3.215
CLUSTER: HH.4.204