Information on SUBCLASS 1.3.7 |
Subclass Accession number: 2127
Subclass: 1.3.7 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 2.7.7 (>75 %) 2.7.7.7 SCOP : 53066 (>75 %) 53098 (>75 %) 53118 (>75 %) |
Number of loops: 7 Average sequence ID (%) : 12.6 +/- 13.4 Average RMSD (Å) : 0.529 +/- 0.229 Consensus geometry
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Consensus Sequence: | pXcXX |
(φψ)-conformation: | aalaa |
Pattern: | [adegt] | [afiklt] | [afglm] | [ADEQRT] | x | [ALV] | x | [DERS] | [adn] | [DGN] | x | x | [EGPS] | [ade] | [AFLV] | x | [dekty] |
Conservation: | -0.605 | -0.842 | -0.939 | 0.219 | -0.821 | 1.517 | -0.905 | 1.325 | -0.277 | 2.533 | -0.779 | -0.559 | 0.432 | 0.139 | 0.511 | -0.717 | -0.232 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e12_A_182 | 1e12 | A | 182 | 198 | DWAASASSAGTAEIFDT | HHHHHHHHHT-HHHHHH | aaaaaaaaavaaaaaaa |
1gai_*_126 | 1gai | - | 137 | 153 | GFGQWLLDNGYTSAATE | HHHHHHHHTT-HHHHHH | aaaaaaaaavaaaaaaa |
1i36_A_154 | 1i36 | A | 175 | 191 | ETLTAAHRLGLEEDVLE | HHHHHHHHTT-HHHHHH | aaaaaaaaavaaaaaaa |
1j97_A_21 | 1j97 | A | 21 | 37 | TIDEIAREAGVEEEVKK | HHHHHHHHTT-HHHHHH | aaaaaaaaavaaaaaaa |
1jqn_A_734 | 1jqn | A | 736 | 752 | TALQKVVEDGKQSELEA | HHHHHHHTTT-HHHHHH | aaaaaaaaavaaaaaaa |
1mna_A_11 | 1mna | A | 14 | 30 | ALFRQAVEDDRYGEFLD | HHHHHHHHTT-HHHHHH | aaaaaaaaavaaaaaaa |
1mxg_A_245 | 1mxg | A | 249 | 265 | YKMDEAFDNNNIPALVY | HHHHHHHTTT-HHHHHH | aaaaaaaaalaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e12_A_182 | 1e12 | A | RETRETINAL | W - 207 |
1e12_A_182 | 1e12 | A | RETRETINAL | L - 208 |
1e12_A_182 | 1e12 | A | RETRETINAL | Y - 210 |
1e12_A_182 | 1e12 | A | RETRETINAL | P - 211 |
1e12_A_182 | 1e12 | A | RETRETINAL | W - 214 |
1gai_*_126 | 1gai | * | MANALPHA-D-MANNOSE | E - 153 |
1i36_A_154 | 1i36 | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | K - 159 |
1j97_A_21 | 1j97 | A | BFDASPARTATE BERYLLIUM TRIFLUORIDE | M - 43 |
1j97_A_21 | 1j97 | A | MGMAGNESIUM ION | M - 43 |
1mxg_A_245 | 1mxg | A | MGMAGNESIUM ION | D - 252 |
1mxg_A_245 | 1mxg | A | MGMAGNESIUM ION | D - 256 |
1mxg_A_245 | 1mxg | A | MGMAGNESIUM ION | N - 257 |
Clusters included in this Subclass |
CLUSTER: HH.2.120 |
CLUSTER: HH.3.215 |
CLUSTER: HH.4.204 |