Logo
Information on SUBCLASS 3.5.1
Subclass Accession number: 215
Subclass: 3.5.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 12.3 +/- 12.9
Average RMSD (Å) : 0.793 +/- 0.212

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: pXGXphX
(φψ)-conformation: aalbpbb
Pattern: [adekrs]x[ailmtv]x[adeknqst]xxx[degknst]x[DGN]x[deknpst][AFILPVY]x[ailpvwy]
Conservation:-0.363-0.5080.865-0.4710.132-0.580-0.040-0.2860.066-0.5453.434-0.747-0.012-0.220-0.710-0.012
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1byf_A_361byf   A4055KAILAFTEVKGHDYWVHHHHHHHHHHT--EEEaaaaaaaaaavbxbxb
1cg2_A_3301cg2   A338353DKAVAYYKEAGGTLGVHHHHHHHHHTT---EEaaaaaaaaaavbbbxb
1cv8_*_671cv8   -6883REMIYFGQTQGRSPQLHHHHHHHHHTT---EEaaaaaaaaaavbbxbx
1edq_A_3311edq   A344359AMLDQLSVETGRKYELHHHHHHHHHHT---EEaaaaaaaaaavxxbbb
1g61_A_20781g61   A20822097DRIKNFLKENNLDLNVHHHHHHHHHTT---EEaaaaaaaaaalbbbxx
1j9b_A_141j9b   A1631RNTLEMIRNSGTEPTIHHHHHHHHHTT---EEaaaaaaaaaavbxxxb
1llf_A_1361llf   A136151AQMVTKSVLMGKPIIHHHHHHHHHHTT---EEaaaaaaaaaavbxbbx
1lng_A_311lng   A3247KDIEKALKKLGLEPKIHHHHHHHHHTT---EEaaaaaaaaaavxbwbx
1q0p_A_2581q0p   A269284VNLIEKVASYGVKPRYHHHHHHHHTTT---EEaaaaaaaaaavbbxxb
1qup_A_541qup   A5570STIINTLRNCGKDAIIHHHHHHHHHTT---EEaaaaaaaaaavbxxbp
1r0v_A_631r0v   A6782YFVYEDLRDRGNKVKIHHHHHHHHHTT---EEaaaaaaaaaavxxbbx
1ro2_A_421ro2   A4459IRYAKWMLEHGFNIIPHHHHHHHHHTT---EEaaaaaaaaaavbxbbx
1v39_*_731v39   -7691RYLRDHFYNLGVIIKWHHHHHHHHHTT---EEaaaaaaaaaavxxbbb
1vsr_A_261vsr   A2641KRLASLLTGQGLAFRVHHHHHHHHHTT---EEaaaaaaaaaavxxbbb
6mht_A_1316mht   A134149EVVKNTMNELDYSFHAHHHHHHHHHTTB--EEaaaaaaaaaavbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1byf_A_361byf   A     ZNZINC ION S - 36
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED S - 36
1byf_A_361byf   A     ZNZINC ION T - 37
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED T - 37
1byf_A_361byf   A     ZNZINC ION M - 38
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED M - 38
1byf_A_361byf   A     ZNZINC ION K - 49
1byf_A_361byf   A     ZNOZINC ION, 2 WATERS COORDINATED K - 49
1byf_A_361byf   A     ZNZINC ION D - 52
1byf_A_361byf   A     ACTACETATE ION D - 52
1cv8_*_671cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE P - 67
1cv8_*_671cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE E - 69
1cv8_*_671cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE M - 70
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE T - 14
1j9b_A_141j9b   A     TASTRIHYDROXYARSENITE(III) T - 14
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE S - 15
1j9b_A_141j9b   A     TASTRIHYDROXYARSENITE(III) S - 15
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE R - 16
1j9b_A_141j9b   A     TASTRIHYDROXYARSENITE(III) R - 16
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE N - 17
1qup_A_541qup   A     MSESELENOMETHIONINE I - 57
1qup_A_541qup   A     MSESELENOMETHIONINE L - 61
1ro2_A_421ro2   A     ZNZINC ION W - 49
1ro2_A_421ro2   A     ZNZINC ION E - 52
1ro2_A_421ro2   A     ZNZINC ION H - 53
1v39_*_731v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE T - 73
1v39_*_731v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE H - 74
1v39_*_731v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 75
1v39_*_731v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 94
1v39_*_731v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 95

Clusters included in this Subclass
CLUSTER: HE.4.147
CLUSTER: HE.5.20
CLUSTER: HE.6.8