ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.5.2

Subclass Accession number: 2151
Subclass: 1.5.2

PSSM

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 2

Average sequence ID (%) : 11.1 +/- 0.0
Average RMSD (Å) : 0.700 +/- 0.000

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	hGpph
(φψ)-conformation:	aeaaa

Pattern:	[F]	[LT]	[EN]	[TV]	[FI]	[G]	[DE]	[DY]	[AY]	[IP]	[PQ]	[AI]	[AR]	x	x	[LT]	[AN]	[RT]
Conservation:	2.488	-0.463	0.231	-0.116	0.058	2.488	0.926	-0.463	-0.463	-0.810	0.058	-0.637	-0.463	-0.637	-0.810	-0.463	-0.637	-0.289

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gpe_A_358	1gpe	A	358	375	FTETFGDYAPQARDLLNT	HHHHHGGGHHHHHHHHHH	aaaaaeaaaaaaaaaaaa
1i1w_A_143	1i1w	A	144	161	FLNVIGEDYIPIAFQTAR	HHHHT-TTHHHHHHHHHH	aaaaaeaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gpe_A_358	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 358
1gpe_A_358	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 359
1gpe_A_358	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 360
1gpe_A_358	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	R - 370
1i1w_A_143	1i1w	A	UNXUNKNOWN ATOM OR ION	L - 145
1i1w_A_143	1i1w	A	EOHETHANOL	L - 145
1i1w_A_143	1i1w	A	UNXUNKNOWN ATOM OR ION	I - 148
1i1w_A_143	1i1w	A	UNXUNKNOWN ATOM OR ION	G - 149
1i1w_A_143	1i1w	A	UNXUNKNOWN ATOM OR ION	E - 150
1i1w_A_143	1i1w	A	EOHETHANOL	E - 150
1i1w_A_143	1i1w	A	UNXUNKNOWN ATOM OR ION	D - 151
1i1w_A_143	1i1w	A	UNXUNKNOWN ATOM OR ION	Q - 158
1i1w_A_143	1i1w	A	EOHETHANOL	Q - 158
1i1w_A_143	1i1w	A	UNXUNKNOWN ATOM OR ION	T - 159
1i1w_A_143	1i1w	A	UNXUNKNOWN ATOM OR ION	A - 160
1i1w_A_143	1i1w	A	EOHETHANOL	R - 161
1i1w_A_143	1i1w	A	UNXUNKNOWN ATOM OR ION	A - 162
1i1w_A_143	1i1w	A	UNXUNKNOWN ATOM OR ION	A - 163

Clusters included in this Subclass

CLUSTER: HH.3.145