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Information on SUBCLASS 2.1.11
Subclass Accession number: 2170
Subclass: 2.1.11 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 12.5 +/- 13.5
Average RMSD (Å) : 0.556 +/- 0.240

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 225-270
Consensus Sequence: XphXpX
(φψ)-conformation: aappaa
Pattern: x[aenpt]x[ACFIWY]x[AGKNQS]x[ADGNPST]xx[ekl]x
Conservation:-1.4770.023-1.1030.243-1.0601.0981.5530.2420.102-0.5441.464-0.542
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aln_*_61aln   -617QTAFAQLADNLQHHHHHTS-HHHHaaaaaaxxaaaa
1doz_A_1511doz   A162173KETYASMPEDERHHHHHHS-HHHHaaaaaaxxaaaa
1ey3_A_2181ey3   A226237AEKIANNSKIIVHHHHHTS-HHHHaaaaaaxpaaaa
1gp6_A_891gp6   A99110GEEFFSLSVEEKHHHHHTS-HHHHaaaaaaxxaaaa
1h1o_A_651h1o   A6576WPVAQALDSAKIHHHHHT--HHHHaaaaaabbaaaa
1hq1_A_251hq1   A2940EAIINSMTMKERHHHHHTS-HHHHaaaaaaxxaaaa
1hyp_*_251hyp   -2940CALIGGLGDIEAHHHHHTS-HHHHaaaaaaxxaaaa
1j98_A_1341j98   A141152MRFWLSQDKEELHHHHHTS-HHHHaaaaaaxxaaaa
1oyz_A_141oyz   A1728YNQCKKLNDDELHHHHHTS-HHHHaaaaaaxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h1o_A_651h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 67
1h1o_A_651h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 68
1h1o_A_651h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 71
1h1o_A_651h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 79
1h1o_A_651h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 80
1h1o_A_651h1o   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 83
1h1o_A_651h1o   A     ZNZINC ION N - 84
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h1o_A_651h1o   A ZN2ZN BINDING SITE FOR CHAIN AN - 84

Clusters included in this Subclass
CLUSTER: HH.2.52