Information on SUBCLASS 3.5.4 |
Subclass Accession number: 218
Subclass: 3.5.4 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 10.3 +/- 9.9 Average RMSD (Å) : 0.825 +/- 0.150 Consensus geometry
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Consensus Sequence: | pXcXphX |
(φψ)-conformation: | aalbpbb |
Pattern: | [GKRT] | [ALT] | x | x | [GNR] | [GIL] | x | x | [GIKV] | [ACFL] | [QS] | x | [KLT] | [EGN] | x | [ADNS] | [AIPV] | x | [GPTV] | [GIVY] | x |
Conservation: | -0.275 | 0.891 | 1.435 | -0.844 | 1.402 | -0.213 | -0.485 | -0.222 | -1.413 | -0.085 | 2.285 | 0.254 | -0.027 | 1.402 | -1.033 | 0.578 | -0.085 | -0.559 | -0.939 | -0.844 | -1.223 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dc1_A_247 | 1dc1 | A | 259 | 279 | TALTRIRNKFSEKGLSPKTIF | HHHHHHHHHHHHTT---EEEE | aaaaaaaaaaaaavbbpxbbb |
1j0a_A_193 | 1j0a | A | 193 | 213 | GTLAGLSLGLSILNEDIRPVG | HHHHHHHHHHHHTT---EEEE | aaaaaaaaaaaaalxxbxwbb |
1q8f_A_43 | 1q8f | A | 45 | 65 | KTLINGLNVCQKLEINVPVYA | HHHHHHHHHHHHTT----EEE | aaaaaaaaaaaaalxxbxbbx |
2gsa_A_328 | 2gsa | A | 338 | 358 | RLSDGLLAIAQETGHAACGGQ | HHHHHHHHHHHHTT---EEEE | aaaaaaaaaaaaavbxbbeeb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1j0a_A_193 | 1j0a | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 193 |
1j0a_A_193 | 1j0a | A | PLPPYRIDOXAL-5'-PHOSPHATE | T - 194 |
1j0a_A_193 | 1j0a | A | PLPPYRIDOXAL-5'-PHOSPHATE | L - 195 |
Clusters included in this Subclass |
CLUSTER: HE.6.79 |