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Information on SUBCLASS 3.5.4
Subclass Accession number: 218
Subclass: 3.5.4 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 10.3 +/- 9.9
Average RMSD (Å) : 0.825 +/- 0.150

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: pXcXphX
(φψ)-conformation: aalbpbb
Pattern: [GKRT][ALT]xx[GNR][GIL]xx[GIKV][ACFL][QS]x[KLT][EGN]x[ADNS][AIPV]x[GPTV][GIVY]x
Conservation:-0.2750.8911.435-0.8441.402-0.213-0.485-0.222-1.413-0.0852.2850.254-0.0271.402-1.0330.578-0.085-0.559-0.939-0.844-1.223
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dc1_A_2471dc1   A259279TALTRIRNKFSEKGLSPKTIFHHHHHHHHHHHHTT---EEEEaaaaaaaaaaaaavbbpxbbb
1j0a_A_1931j0a   A193213GTLAGLSLGLSILNEDIRPVGHHHHHHHHHHHHTT---EEEEaaaaaaaaaaaaalxxbxwbb
1q8f_A_431q8f   A4565KTLINGLNVCQKLEINVPVYAHHHHHHHHHHHHTT----EEEaaaaaaaaaaaaalxxbxbbx
2gsa_A_3282gsa   A338358RLSDGLLAIAQETGHAACGGQHHHHHHHHHHHHTT---EEEEaaaaaaaaaaaaavbxbbeeb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j0a_A_1931j0a   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 193
1j0a_A_1931j0a   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 194
1j0a_A_1931j0a   A     PLPPYRIDOXAL-5'-PHOSPHATE L - 195

Clusters included in this Subclass
CLUSTER: HE.6.79