Information on SUBCLASS 3.5.5 |
Subclass Accession number: 219
Subclass: 3.5.5 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0004089 (>75 %) GO:0008270 (>75 %) GO:0016829 (>75 %) GO:0016835 (>75 %) GO:0016836 (>75 %) GO:0046914 (>75 %) SCOP : 53040 (>75 %) 53056 (>75 %) 53057 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 7.8 +/- 10.7 Average RMSD (Å) : 1.000 +/- 0.183 Consensus geometry
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Consensus Sequence: | pXcXXhh |
(φψ)-conformation: | aalbpbb |
Pattern: | x | x | x | x | x | x | x | x | [GKN] | x | [DP] | [FIV] | x | [CFLT] | x |
Conservation: | 0.091 | 0.030 | -0.877 | -0.877 | -0.091 | -0.756 | -0.514 | -0.238 | 0.755 | -0.127 | 2.922 | 1.223 | -0.695 | -0.212 | -0.635 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1j23_A_94 | 1j23 | A | 101 | 115 | IAAVTVDFGVPIIFS | HHHHHHTS---EEEE | aaaaaaaavbpbxxb |
1qba_*_246 | 1qba | - | 252 | 266 | VSQRFALLGVPVQTN | HHHHHHHTT--EEEE | aaaaaaaavbxxbaa |
1r6t_A_145 | 1r6t | A | 145 | 159 | QVLDAYENKKPFYLY | HHHHHHHTT--EEEE | aaaaaaaavxwbbxb |
1ukf_A_240 | 1ukf | A | 247 | 261 | LIDHYNSLNYDVACV | HHHHHHHTT--EEEE | aaaaaaaavbpxabb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1r6t_A_145 | 1r6t | A | MSESELENOMETHIONINE | Q - 145 |
1r6t_A_145 | 1r6t | A | MSESELENOMETHIONINE | V - 146 |
1r6t_A_145 | 1r6t | A | MSESELENOMETHIONINE | L - 147 |
1r6t_A_145 | 1r6t | A | MSESELENOMETHIONINE | D - 148 |
1r6t_A_145 | 1r6t | A | TYMTRYPTOPHANYL-5'AMP | Y - 159 |
1r6t_A_145 | 1r6t | A | TYMTRYPTOPHANYL-5'AMP | T - 160 |
Clusters included in this Subclass |
CLUSTER: HE.5.103 |