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Information on SUBCLASS 3.5.5
Subclass Accession number: 219
Subclass: 3.5.5 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004089 (>75 %)  GO:0008270 (>75 %)  GO:0016829 (>75 %)  GO:0016835 (>75 %)  GO:0016836 (>75 %)  GO:0046914 (>75 %)  
SCOP : 53040 (>75 %)  53056 (>75 %)  53057 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 7.8 +/- 10.7
Average RMSD (Å) : 1.000 +/- 0.183

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: pXcXXhh
(φψ)-conformation: aalbpbb
Pattern: xxxxxxxx[GKN]x[DP][FIV]x[CFLT]x
Conservation:0.0910.030-0.877-0.877-0.091-0.756-0.514-0.2380.755-0.1272.9221.223-0.695-0.212-0.635
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1j23_A_941j23   A101115IAAVTVDFGVPIIFSHHHHHHTS---EEEEaaaaaaaavbpbxxb
1qba_*_2461qba   -252266VSQRFALLGVPVQTNHHHHHHHTT--EEEEaaaaaaaavbxxbaa
1r6t_A_1451r6t   A145159QVLDAYENKKPFYLYHHHHHHHTT--EEEEaaaaaaaavxwbbxb
1ukf_A_2401ukf   A247261LIDHYNSLNYDVACVHHHHHHHTT--EEEEaaaaaaaavbpxabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1r6t_A_1451r6t   A     MSESELENOMETHIONINE Q - 145
1r6t_A_1451r6t   A     MSESELENOMETHIONINE V - 146
1r6t_A_1451r6t   A     MSESELENOMETHIONINE L - 147
1r6t_A_1451r6t   A     MSESELENOMETHIONINE D - 148
1r6t_A_1451r6t   A     TYMTRYPTOPHANYL-5'AMP Y - 159
1r6t_A_1451r6t   A     TYMTRYPTOPHANYL-5'AMP T - 160

Clusters included in this Subclass
CLUSTER: HE.5.103