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Information on SUBCLASS 2.3.3
Subclass Accession number: 2221
Subclass: 2.3.3 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 8.5 +/- 10.4
Average RMSD (Å) : 0.692 +/- 0.161

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XphXXX
(φψ)-conformation: aabpaa
Pattern: [filvy]xxxxx[adekqrs]x[dehnprs][afiklv][aegkqs][cdenst][cilmv][acltv]
Conservation:0.665-0.667-0.042-1.203-0.997-0.9821.203-0.8210.565-0.387-0.314-0.0152.3710.626
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bhp_*_71bhp   -1326YNLCRARGAQKLCAHHHHTTTS-HHHHHaaaaaaabxaaaaa
1ekj_A_2511ekj   A257270VKAQHGDAPFAELCHHHHSTTS-HHHHHaaaaaaabpaaaaa
1f1z_A_1951f1z   A201214ILQEKGDENIINVCHHHHTTTSBHHHHHaaaaaaaxxaaaaa
1hlv_A_101hlv   A1932EVEENPDLRKGEIAHHHH-TTS-HHHHHaaaaaaabxaaaaa
1jgt_A_4241jgt   A427440RAAMADALPAETVNHHHHTTTS-HHHHHaaaaaaabxaaaaa
1kiy_A_601kiy   A7487VVYSWAKVSKECMAHHHHSTTS-HHHHHaaaaaaaxxaaaaa
1kxp_D_1521kxp   D163176YSTNYGQAPLSLLVHHHHSTTS-HHHHHaaaaaaaxpaaaaa
1m72_A_2311m72   A240253LRYAGTERDILTLLHHHHTTTS-HHHHHaaaaaaaxxaaaaa
1n5u_A_161n5u   A2740FAQYLQQCPFEDHVHHHHSTTS-HHHHHaaaaaaaxxaaaaa
1nw9_B_3621nw9   B371384FEQWAHSEDLQSLLHHHHTTTS-HHHHHaaaaaaabxaaaaa
1o0w_A_511o0w   A6982LYKKYPEAEVGDLAHHHH-TTS-HHHHHaaaaaaaxxaaaaa
1pvm_A_1181pvm   A118131LTDLSRYLSRASITHHHHTTTS-HHHHHaaaaaaabxaaaaa
1pyo_B_2381pyo   B247260FSERACDMHVADMLHHHHTTTS-HHHHHaaaaaaNbxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bhp_*_71bhp   *     GOLGLYCEROL T - 7
1bhp_*_71bhp   *     GOLGLYCEROL L - 8
1bhp_*_71bhp   *     PO4PHOSPHATE ION R - 10
1bhp_*_71bhp   *     GOLGLYCEROL R - 10
1bhp_*_71bhp   *     ACTACETATE ION N - 11
1bhp_*_71bhp   *     GOLGLYCEROL N - 11
1bhp_*_71bhp   *     ACTACETATE ION C - 12
1bhp_*_71bhp   *     GOLGLYCEROL Y - 13
1bhp_*_71bhp   *     GOLGLYCEROL N - 14
1bhp_*_71bhp   *     ACTACETATE ION L - 15
1bhp_*_71bhp   *     GOLGLYCEROL R - 17
1bhp_*_71bhp   *     GOLGLYCEROL Q - 22
1ekj_A_2511ekj   A     AZIAZIDE ION L - 251
1ekj_A_2511ekj   A     AZIAZIDE ION P - 252
1ekj_A_2511ekj   A     EGLETHYLENE GLYCOL P - 252
1ekj_A_2511ekj   A     EGLETHYLENE GLYCOL A - 280
1ekj_A_2511ekj   A     EGLETHYLENE GLYCOL N - 284
1jgt_A_4241jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER R - 427
1kiy_A_601kiy   A     EDO1,2-ETHANEDIOL T - 69
1kiy_A_601kiy   A     EDO1,2-ETHANEDIOL I - 70
1kiy_A_601kiy   A     EDO1,2-ETHANEDIOL M - 73
1kiy_A_601kiy   A     EDO1,2-ETHANEDIOL W - 78
1kiy_A_601kiy   A     EDO1,2-ETHANEDIOL Y - 93
1kiy_A_601kiy   A     EDO1,2-ETHANEDIOL Y - 95
1kiy_A_601kiy   A     EDO1,2-ETHANEDIOL T - 96
1kiy_A_601kiy   A     EDO1,2-ETHANEDIOL L - 97
1kiy_A_601kiy   A     EDO1,2-ETHANEDIOL V - 98
1kiy_A_601kiy   A     EDO1,2-ETHANEDIOL L - 99
1n5u_A_161n5u   A     MYRMYRISTIC ACID F - 19
1n5u_A_161n5u   A     MYRMYRISTIC ACID L - 22
1n5u_A_161n5u   A     MYRMYRISTIC ACID V - 23
1n5u_A_161n5u   A     MYRMYRISTIC ACID A - 26
1n5u_A_161n5u   A     MYRMYRISTIC ACID F - 27
1n5u_A_161n5u   A     MYRMYRISTIC ACID V - 46

Clusters included in this Subclass
CLUSTER: HH.4.28