ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.3.7

Subclass Accession number: 2225
Subclass: 2.3.7

PSSM

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
GO : GO:0005344 (>75 %)
SCOP : 46457 (>75 %) 46458 (>75 %) 46463 (>75 %)

Number of loops: 8

Average sequence ID (%) : 9.2 +/- 10.5
Average RMSD (Å) : 0.825 +/- 0.139

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 45-90

rho (°): 0-45

Consensus Sequence:	ppXchX
(φψ)-conformation:	aabpaa

Pattern:	[aegp]	x	x	[afgiy]	[adens]	x	[acgit]	[DEN]	x	x	x	x
Conservation:	0.028	-0.594	-0.314	-0.064	0.419	-0.239	-0.288	2.985	-1.006	-0.364	-0.371	-0.191

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bgf_*_35	1bgf	-	35	46	AQWIETQDWEVA	HHHHHHS-HHHH	aaaaaaxxaaaa
1d8c_A_538	1d8c	A	545	556	ALHYHQTNVQSV	HHHHHHS-HHHH	aaaaaabxaaaa
1itx_A_256	1itx	A	256	267	ATYAANTELAKI	HHHHHTS-HHHH	aaaaaabbaaaa
1jqn_A_758	1jqn	A	768	779	EMVFAKADLWLA	HHHHHH--HHHH	aaaaaaxbaaaa
1ld8_B_666	1ld8	B	666	677	EEAYDIINREKL	HHHHHHS-HHHH	aaaaaaxxaaaa
1leh_A_138	1leh	A	138	149	PAFGSSGNPSPV	HHHHHH--HHHH	aaaaaabxaaaa
1msw_D_821	1msw	D	833	844	VDTYESCDVLAD	HHHHHH--HHHH	aaaaaabxaaaa
5csm_A_185	5csm	A	187	198	GIMKNITNSAVE	HHHHHT--HHHH	aaaaaabbaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	T - 539
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	A - 540
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	A - 541
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	L - 543
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	H - 544
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	H - 547
1jqn_A_758	1jqn	A	ASPASPARTIC ACID	M - 769
1jqn_A_758	1jqn	A	ASPASPARTIC ACID	K - 773

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
5csm_A_185	5csm	A	ACTACTIVE SITE.	N - 194
5csm_A_185	5csm	A	ACTACTIVE SITE.	V - 197
5csm_A_185	5csm	A	ACTACTIVE SITE.	E - 198

Clusters included in this Subclass

CLUSTER: HH.2.67