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Information on SUBCLASS 3.6.1
Subclass Accession number: 225
Subclass: 3.6.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 13.7 +/- 14.1
Average RMSD (Å) : 0.629 +/- 0.242

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXGhXXh
(φψ)-conformation: aagpabb
Pattern: x[aiklmv][afgivy]xx[ACFGLMW][acfikltv][aeknqr][aeknqr][EGKNS][acfgilvwy][adegknrt]x[afilv]x
Conservation:-0.825-0.0930.275-0.625-0.8730.096-0.9500.208-0.0023.074-0.5250.221-0.8080.838-0.011
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cvr_A_1631cvr   A169183VIANLLTQYGYTKIIHHHHHHHHHT-SEEEaaaaaaaaagpabbx
1dkr_A_681dkr   A7791IMVDALKRASAKTINHHHHHHHHTT-SEEEaaaaaaaaavxabbb
1e19_A_2741e19   A279293LAAIRFIEWGGERAIHHHHHHHHHT-SEEEaaaaaaaaagxabbb
1f3l_A_2651f3l   A265279ILSMFAAKAGAKKVIHHHHHHHHHT-SEEEaaaaaaaaagpabbb
1h7w_A_5571h7w   A558572SMIRRAFEAGWGFALHHHHHHHHHT-SEEEaaaaaaaaagxabbb
1hc7_A_3321hc7   A334348YKFHEWELKGVPFRVHHHHHHHHTT-SEEEaaaaaaaaavxabbb
1hrk_A_3151hrk   A317331ESIKGLCERGRKNILHHHHHHHHTT--EEEaaaaaaaaavxabbb
1j18_A_3751j18   A380394RVAEMAFNYNFAGFTHHHHHHHHTT-SEEEaaaaaaaaalxabbb
1jlj_A_631jlj   A6983TLIDWCDEKELNLILHHHHHHHTS--SEEEaaaaaaaaalxabbb
1mla_*_1731mla   -178192RAGAACKAAGAKRALHHHHHHHHTT-SEEEaaaaaaaaagxabbb
1nvm_A_2081nvm   A210224ANSIVAVEEGCDRVDHHHHHHHHTT--EEEaaaaaaaaagxabbx
1nvm_A_291nvm   A3448AIARALDKAKVDSIEHHHHHHHHHT-SEEEaaaaaaaaavxabbx
1nwc_A_1131nwc   A118132HVISEGLKKGIKTFVHHHHHHHHHT--EEEaaaaaaaaagxabbb
1okk_D_1691okk   D175189DAVQAMKARGYDLLFHHHHHHHHHT-SEEEaaaaaaaaavxabbb
1qas_A_3261qas   A327341EAYIRALCKGCRCLEHHHHHHHHTT--EEEaaaaaaaaavpabbb
1udv_A_161udv   A2135LDVIVLFNQGIDEVIHHHHHHHHTT--EEEaaaaaaaaagxabbb
3pmg_A_663pmg   A7286LIVRIAAANGIGRLVHHHHHHHHTT--EEEaaaaaaaaavxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cvr_A_1631cvr   A     ACLDEOXY-CHLOROMETHYL-ARGININE D - 163
1cvr_A_1631cvr   A     CACALCIUM ION Q - 165
1cvr_A_1631cvr   A     CACALCIUM ION H - 166
1cvr_A_1631cvr   A     CACALCIUM ION E - 167
1cvr_A_1631cvr   A     CACALCIUM ION V - 169
1cvr_A_1631cvr   A     CACALCIUM ION I - 170
1e19_A_2741e19   A     ADPADENOSINE-5'-DIPHOSPHATE M - 274
1e19_A_2741e19   A     ADPADENOSINE-5'-DIPHOSPHATE G - 275
1e19_A_2741e19   A     ADPADENOSINE-5'-DIPHOSPHATE K - 277
1e19_A_2741e19   A     MGMAGNESIUM ION K - 277
1f3l_A_2651f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 265
1f3l_A_2651f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 266
1f3l_A_2651f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 281
1f3l_A_2651f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 282
1nvm_A_291nvm   A     SULSULFATE ANION L - 29
1nvm_A_291nvm   A     SULSULFATE ANION D - 30
1nvm_A_291nvm   A     SULSULFATE ANION R - 33
1okk_D_1691okk   D     EDO1,2-ETHANEDIOL A - 170
1okk_D_1691okk   D     EDO1,2-ETHANEDIOL A - 171
1okk_D_1691okk   D     EDO1,2-ETHANEDIOL Y - 174
1udv_A_161udv   A     ZNZINC ION D - 18
1udv_A_161udv   A     ZNZINC ION H - 19
1udv_A_161udv   A     ZNZINC ION D - 22

Clusters included in this Subclass
CLUSTER: HE.2.72
CLUSTER: HE.3.37
CLUSTER: HE.4.43
CLUSTER: HE.5.109