ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.1.6

Subclass Accession number: 2271
Subclass: 3.1.6

PSSM

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
GO : GO:0003700 (>50 %) GO:0003707 (>50 %) GO:0004872 (>50 %) GO:0004879 (>50 %)
SCOP : 48507 (>50 %) 48508 (>50 %) 48509 (>50 %)

Number of loops: 5

Average sequence ID (%) : 15.9 +/- 15.0
Average RMSD (Å) : 0.980 +/- 0.228

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 45-90

Consensus Sequence:	XhGhchp
(φψ)-conformation:	aalbpaa

Pattern:	[akr]	[CDEQ]	[derw]	[aflw]	[ADEN]	[AKR]	[FKLV]	[GK]	x	[DNS]	[lpvy]	[EQRW]	[ael]	[ACLY]	x	[DEQR]	[DNQT]
Conservation:	0.043	0.066	-1.217	-0.959	-0.239	0.477	-0.489	2.311	-0.329	1.811	-1.476	0.059	-0.907	-0.410	-0.066	1.040	0.285

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d8w_A_12	1d8w	A	21	37	KQRFAAVGIDVEEALRQ	HHHHHHTT--HHHHHHH	aaaaaaavbxaaaaaaa
1fxx_A_317	1fxx	A	317	333	PEDADRLGINRQHCLDN	HHHHHHHT--HHHHHHH	aaaaaaavxxaaaaaaa
1hhs_A_564	1hhs	A	573	589	RCWWNAFGESYRAYRED	HHHHHHHSS-HHHHHHH	aaaaaaavbxaaaaaaa
1mla_*_27	1mla	-	34	50	AEASAALGYDLWALTQQ	HHHHHHHTS-HHHHHHH	aaaaaaavbxaaaaaaa
1o1y_A_189	1o1y	A	189	205	KDELEKKKIDPRLLLET	HHHHHHTT--HHHHHHH	aaaaaaalbxaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d8w_A_12	1d8w	A	MSESELENOMETHIONINE	L - 13
1d8w_A_12	1d8w	A	MSESELENOMETHIONINE	E - 14
1d8w_A_12	1d8w	A	MSESELENOMETHIONINE	W - 17
1d8w_A_12	1d8w	A	MSESELENOMETHIONINE	L - 35
1d8w_A_12	1d8w	A	MSESELENOMETHIONINE	L - 38
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	P - 199
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	L - 202
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	L - 203
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	A - 206
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	E - 209
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	E - 210
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	K - 211
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	L - 213
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	K - 214
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	L - 217
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	S - 219
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	L - 220
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	L - 221
1o1y_A_189	1o1y	A	MSESELENOMETHIONINE	E - 222

Clusters included in this Subclass

CLUSTER: HH.3.149

CLUSTER: HH.4.211