ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.6.4

Subclass Accession number: 228
Subclass: 3.6.4

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : - (>75 %)  - (>75 %)  1.1 (>50 %)  1.1.1 (>50 %)
GO : GO:0004497 (>75 %)  GO:0016614 (>50 %)  GO:0016616 (>50 %)
SCOP : 48263 (>75 %)  48264 (>75 %)  48265 (>75 %)

Number of loops: 5

Average sequence ID (%) : 10.0 +/- 10.9
Average RMSD (Å) : 0.720 +/- 0.311

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hXGhXXX
(φψ)-conformation:	aagpabb

Pattern:	x	[aekl]	[ALPVW]	x	[aefl]	[AKLT]	[GK]	[FIVW]	[DKP]	x	x	[TVWY]	x	x
Conservation:	-0.564	-0.441	-0.768	-0.237	-0.441	0.023	2.845	0.653	1.105	-0.441	-0.240	0.253	-0.692	-1.054

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ddz_A_436	1ddz	A	444	457	YAVQYLKVKRVVVC	HHHHTS--SEEEEE	aaaaaalxabbbbb
1hc7_A_332	1hc7	A	337	350	HEWELKGVPFRVEL	HHHHHTT-SEEEEE	aaaaaavxabbbxb
1nwc_A_76	1nwc	A	84	97	PKLKATGWDGYWVD	HHHHHTT--SEEEE	aaaaaavpaxbbbb
1psw_A_95	1psw	A	95	108	LVPLFAGIPHRTGW	HHHHHTT-SEEEEE	aaaaaavxabbbex
1vhh_*_159	1vhh	-	164	177	RLAVEAGFDWVYYE	HHHHHTT-SEEEEE	aaaaaagxabbbxa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ddz_A_436	1ddz	A	ZNZINC ION	H - 459
1psw_A_95	1psw	A	MSESELENOMETHIONINE	V - 96
1vhh_*_159	1vhh	*	ZNZINC ION	E - 177

Clusters included in this Subclass

CLUSTER: HE.5.82