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Information on SUBCLASS 3.2.9
Subclass Accession number: 2283
Subclass: 3.2.9 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 8.9 +/- 9.8
Average RMSD (Å) : 0.817 +/- 0.279

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpXhppp
(φψ)-conformation: aalppaa
Pattern: xxxx[AKRT]x[dersy][DEGQ][aipv][DST][dhqs][DEQT]x[klv][ADNSV]
Conservation:-0.647-1.293-0.326-0.8071.058-0.898-0.9380.993-0.4721.928-0.1561.8320.008-0.165-0.118
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8o_*_1611a8o   -169183YKTLRAEQASQEVKNHHHHHTTT--HHHHHaaaaaaalxxaaaaa
1eca_*_771eca   -8498VASHKPRGVTHDQLNHHHHGGGT--HHHHHaaaaaaavxxaaaaa
1n55_A_961n55   A96110SERRTYYGETDEIVAHHHHHHS---HHHHHaaaaaaavxxaaaaa
1pdo_*_951pdo   -101115TLMARDDDPSFDELVHHHHHTT---HHHHHaaaaaaalwxaaaaa
1qkm_A_4201qkm   A438452VWVIAKSGISSQQQSHHHHHT---HHHHHHaaaaaaavxxaaaaa
1utg_*_181utg   -2236ETSLKEFEPDDTMKDHHHHHTT---HHHHHaaaaaaalxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8o_*_1611a8o   *     MSESELENOMETHIONINE F - 161
1a8o_*_1611a8o   *     MSESELENOMETHIONINE R - 162
1a8o_*_1611a8o   *     MSESELENOMETHIONINE V - 165
1a8o_*_1611a8o   *     MSESELENOMETHIONINE R - 167
1a8o_*_1611a8o   *     MSESELENOMETHIONINE F - 168
1a8o_*_1611a8o   *     MSESELENOMETHIONINE Y - 169
1a8o_*_1611a8o   *     MSESELENOMETHIONINE T - 171
1a8o_*_1611a8o   *     MSESELENOMETHIONINE L - 172
1a8o_*_1611a8o   *     MSESELENOMETHIONINE E - 180
1a8o_*_1611a8o   *     MSESELENOMETHIONINE V - 181
1a8o_*_1611a8o   *     MSESELENOMETHIONINE K - 182
1a8o_*_1611a8o   *     MSESELENOMETHIONINE N - 183
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 83
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 86
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 87
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 90
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 92
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE T - 93
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 96
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 97
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 100
1n55_A_961n55   A     PGA2-PHOSPHOGLYCOLIC ACID E - 97
1n55_A_961n55   A     GOLGLYCEROL R - 98
1n55_A_961n55   A     GOLGLYCEROL C - 117
1qkm_A_4201qkm   A     GENGENISTEIN K - 471
1qkm_A_4201qkm   A     GENGENISTEIN G - 472
1qkm_A_4201qkm   A     GENGENISTEIN M - 473
1qkm_A_4201qkm   A     GENGENISTEIN H - 475
1qkm_A_4201qkm   A     GENGENISTEIN L - 476

Clusters included in this Subclass
CLUSTER: HH.4.130
CLUSTER: HH.5.118