ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.2.11

Subclass Accession number: 2285
Subclass: 3.2.11

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0000287 (>75 %)

Number of loops: 5

Average sequence ID (%) : 11.0 +/- 15.7
Average RMSD (Å) : 0.740 +/- 0.134

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XhcXXpp
(φψ)-conformation:	aalppaa

Pattern:	x	x	[cdry]	[knqr]	[afik]	[agl]	[GN]	x	[GPS]	[KTY]	[EHQ]	x	[AFPY]	x	[AER]	[EFL]	[AILTV]	[fgik]	x	x
Conservation:	-1.111	-0.546	-0.973	-0.204	-0.845	-0.747	2.693	-0.503	0.812	0.487	2.111	-0.418	0.083	-0.383	0.643	-0.173	0.479	-1.143	-0.199	-0.063

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1j5x_A_162	1j5x	A	162	181	LADKIAGNSTERFSELVGYS	HHHHHHT---HHHHHHHHHH	aaaaaavxxaaaaaaaaaaa
1pt6_A_283	1pt6	A	283	302	GSYNRGNLSTEKFVEEIKSI	HHHHHTT---HHHHHHHHHH	aaaaaalxxaaaaaaaaaaa
1q8i_A_643	1q8i	A	653	672	YLRIFRNEPYQEYVRETIDK	HHHHHTT---HHHHHHHHHH	aaaaaalxxaaaaaaaaaaa
1rzh_L_84	1rzh	L	106	125	EICRKLGIGYHIPFAFAFAI	HHHHHHT--SHHHHHHHHHH	aaaaaavbxaaaaaaaaaaa
1rzh_M_113	1rzh	M	135	154	LRAQALGMGKHTAWAFLSAI	HHHHHTT--SHHHHHHHHHH	aaaaaavxxaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1j5x_A_162	1j5x	A	MSESELENOMETHIONINE	L - 162
1j5x_A_162	1j5x	A	MSESELENOMETHIONINE	A - 163
1j5x_A_162	1j5x	A	MSESELENOMETHIONINE	D - 164
1j5x_A_162	1j5x	A	MSESELENOMETHIONINE	K - 165
1j5x_A_162	1j5x	A	MSESELENOMETHIONINE	T - 171
1j5x_A_162	1j5x	A	MSESELENOMETHIONINE	F - 174
1pt6_A_283	1pt6	A	MGMAGNESIUM ION	S - 284
1pt6_A_283	1pt6	A	GOLGLYCEROL	N - 286
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	I - 89
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	C - 92
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	A - 93
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	A - 96
1rzh_L_84	1rzh	L	BCLBACTERIOCHLOROPHYLL A	F - 97
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	F - 97
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	F - 97
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	V - 98
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	W - 100
1rzh_L_84	1rzh	L	U10UBIQUINONE-10	W - 100
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	A - 101
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	L - 102
1rzh_L_84	1rzh	L	U10UBIQUINONE-10	R - 103
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	E - 104
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	V - 105
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	Y - 115
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	W - 115
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	H - 116
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	L - 116
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	I - 117
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	I - 117
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	P - 118
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	P - 118
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	F - 119
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	S - 119
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	A - 120
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	A - 120
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	F - 120
1rzh_L_84	1rzh	L	BCLBACTERIOCHLOROPHYLL A	F - 121
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	F - 121
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	F - 121
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	A - 122
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	A - 122
1rzh_M_113	1rzh	M	BCLBACTERIOCHLOROPHYLL A	M - 122
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	M - 122
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	M - 122
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	F - 123
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	F - 123
1rzh_L_84	1rzh	L	BCLBACTERIOCHLOROPHYLL A	A - 124
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	A - 124
1rzh_L_84	1rzh	L	BCLBACTERIOCHLOROPHYLL A	I - 125
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	I - 125
1rzh_L_84	1rzh	L	HTOHEPTANE-1,2,3-TRIOL	I - 125
1rzh_M_113	1rzh	M	BCLBACTERIOCHLOROPHYLL A	A - 125
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	A - 125
1rzh_M_113	1rzh	M	BCLBACTERIOCHLOROPHYLL A	V - 126
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	V - 126
1rzh_L_84	1rzh	L	BCLBACTERIOCHLOROPHYLL A	A - 127
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	W - 127
1rzh_L_84	1rzh	L	BCLBACTERIOCHLOROPHYLL A	Y - 128
1rzh_L_84	1rzh	L	BPHBACTERIOPHEOPHYTIN A	Y - 128
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	W - 129
1rzh_M_113	1rzh	M	U10UBIQUINONE-10	W - 129
1rzh_L_84	1rzh	L	BCLBACTERIOCHLOROPHYLL A	T - 130
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	W - 130
1rzh_L_84	1rzh	L	BCLBACTERIOCHLOROPHYLL A	L - 131
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	T - 133
1rzh_M_113	1rzh	M	CDLCARDIOLIPIN	M - 142
1rzh_M_113	1rzh	M	CDLCARDIOLIPIN	G - 143
1rzh_M_113	1rzh	M	CDLCARDIOLIPIN	K - 144
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	H - 145
1rzh_M_113	1rzh	M	CDLCARDIOLIPIN	H - 145
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	T - 146
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	A - 147
1rzh_M_113	1rzh	M	CDLCARDIOLIPIN	W - 148
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	A - 149
1rzh_M_113	1rzh	M	CDLCARDIOLIPIN	A - 149
1rzh_M_113	1rzh	M	BCLBACTERIOCHLOROPHYLL A	F - 150
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	F - 150
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	L - 151
1rzh_M_113	1rzh	M	CDLCARDIOLIPIN	L - 151
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	S - 152
1rzh_M_113	1rzh	M	CDLCARDIOLIPIN	S - 152
1rzh_M_113	1rzh	M	BCLBACTERIOCHLOROPHYLL A	A - 153
1rzh_M_113	1rzh	M	BPHBACTERIOPHEOPHYTIN A	A - 153
1rzh_M_113	1rzh	M	BCLBACTERIOCHLOROPHYLL A	I - 154
1rzh_M_113	1rzh	M	CDLCARDIOLIPIN	W - 155
1rzh_M_113	1rzh	M	BCLBACTERIOCHLOROPHYLL A	L - 156
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	L - 156
1rzh_M_113	1rzh	M	BCLBACTERIOCHLOROPHYLL A	W - 157
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	W - 157
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	M - 158
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	V - 159
1rzh_M_113	1rzh	M	BCLBACTERIOCHLOROPHYLL A	L - 160
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	L - 160
1rzh_M_113	1rzh	M	SPOSPHEROIDENE	G - 161

Clusters included in this Subclass

CLUSTER: HH.4.95

CLUSTER: HH.6.65