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Information on SUBCLASS 3.2.13
Subclass Accession number: 2287
Subclass: 3.2.13 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003700 (>75 %)  GO:0003707 (>75 %)  GO:0004872 (>75 %)  GO:0004879 (>75 %)  
SCOP : 48507 (>75 %)  48508 (>75 %)  48509 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 12.7 +/- 17.5
Average RMSD (Å) : 0.725 +/- 0.150

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXcXppp
(φψ)-conformation: aalppaa
Pattern: [AGTV]x[NQS][FHL]x[DPS]x[EGN][HLMV][DST][DHT][DT][AEQ]x[AEGN]xx
Conservation:-0.798-1.4301.183-0.203-1.0691.088-1.3390.783-0.4380.9750.3971.7370.958-1.069-0.6180.352-0.510
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cyo_*_551cyo   -5571TENFEDVGHSTDARELSHHHHHHTT--HHHHHHHaaaaaaalxxaaaaaaa
1eca_*_771eca   -84100VASHKPRGVTHDQLNNFHHHHGGGT--HHHHHHHaaaaaaavxxaaaaaaa
1fcy_A_3081fcy   A315331AGQLLPLEMDDTETGLLHHHHGGG---HHHHHHHaaaaaaalxxaaaaaaa
1n46_A_3491n46   A357373GMSLSSFNLDDTEVALLHHHHGGGT--HHHHHHHaaaaaaalpbaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE N - 57
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 58
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 61
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE G - 62
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 63
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 64
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE D - 66
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 67
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 68
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 70
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 71
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 83
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 86
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 87
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 90
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 92
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE T - 93
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 96
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 97
1eca_*_771eca   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 100
1n46_A_3491n46   A     PFA[4-(4-HYDROXY-3-ISOPROPYL-PHENOXY)-3,5-DIMETHYL-PHENYL]-6-AZAURACIL I - 353

Clusters included in this Subclass
CLUSTER: HH.5.213
CLUSTER: HH.7.79