Information on SUBCLASS 3.2.25 |
Subclass Accession number: 2299
Subclass: 3.2.25 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003746 (>50 %) GO:0008135 (>50 %) SCOP : 54712 (>50 %) 54713 (>50 %) 54714 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 17.2 +/- 27.7 Average RMSD (Å) : 0.867 +/- 0.208 Consensus geometry
|
Consensus Sequence: | pXcXXpX |
(φψ)-conformation: | aalppaa |
Pattern: | [ERY] | x | [ILV] | x | x | x | x | [AL] | [LMT] | [KNQ] | x | [GN] | [AK] | [PT] | [EKQ] | [EPQ] | x | [AR] | [ET] | [AK] | [IM] | [AKV] | [EK] | [GI] | [QR] | x | [CK] | [KY] | [FVY] | x | [EGN] | [EG] | [LV] |
Conservation: | -0.809 | -0.234 | 1.104 | -0.936 | -1.446 | -1.574 | -0.936 | -0.107 | -0.171 | 0.339 | -1.319 | 1.641 | 0.314 | 1.335 | 0.977 | 0.212 | -1.025 | 0.072 | 0.493 | 0.314 | 1.624 | -1.064 | 1.589 | -0.909 | 1.589 | -1.319 | 0.110 | 0.302 | 0.467 | -1.446 | -0.299 | 0.123 | 0.990 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1efu_B_187 | 1efu | B | 194 | 226 | YQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEV | HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHH | aaaaaaaaaaavpxaaaaaaaaaaaaaaaaaaa |
1puo_A_22 | 1puo | A | 22 | 54 | ELLLDLSLTKVNATEPERTAMKKIQDCYVENGL | HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHH | aaaaaaaaaaalxxaaaaaaaaaaaaaaaaaea |
1tfe_*_115 | 1tfe | - | 122 | 154 | RQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEV | HHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHH | aaaaaaaaaaavxxaaaaaaaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1puo_A_22 | 1puo | A | MPD2-METHYL-2,4-PENTANEDIOL | M - 42 |
1puo_A_22 | 1puo | A | MPD2-METHYL-2,4-PENTANEDIOL | I - 45 |
1puo_A_22 | 1puo | A | MPD2-METHYL-2,4-PENTANEDIOL | Y - 49 |
1puo_A_22 | 1puo | A | MPD2-METHYL-2,4-PENTANEDIOL | R - 57 |
1puo_A_22 | 1puo | A | MPD2-METHYL-2,4-PENTANEDIOL | V - 58 |
1puo_A_22 | 1puo | A | MPD2-METHYL-2,4-PENTANEDIOL | D - 60 |
1puo_A_22 | 1puo | A | MPD2-METHYL-2,4-PENTANEDIOL | G - 61 |
1puo_A_22 | 1puo | A | MPD2-METHYL-2,4-PENTANEDIOL | L - 62 |
1puo_A_22 | 1puo | A | MPD2-METHYL-2,4-PENTANEDIOL | M - 64 |
1puo_A_22 | 1puo | A | MPD2-METHYL-2,4-PENTANEDIOL | T - 65 |
Clusters included in this Subclass |
CLUSTER: HH.4.217 |